Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   EWA65_RS07905 Genome accession   NZ_CP035688
Coordinates   1764733..1768080 (-) Length   1115 a.a.
NCBI ID   WP_195707960.1    Uniprot ID   -
Organism   Vibrio metoecus strain 08-2459     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759733..1773080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA65_RS07885 - 1760915..1761352 (+) 438 WP_154138920.1 HIT family protein -
  EWA65_RS07890 - 1761458..1761688 (-) 231 WP_000604018.1 FeoC-like transcriptional regulator -
  EWA65_RS07895 feoB 1761685..1763961 (-) 2277 WP_154138921.1 Fe(2+) transporter permease subunit FeoB -
  EWA65_RS07900 - 1763958..1764188 (-) 231 WP_000777867.1 ferrous iron transport protein A -
  EWA65_RS07905 tfoS 1764733..1768080 (-) 3348 WP_195707960.1 helix-turn-helix domain-containing protein Regulator
  EWA65_RS07910 znuA 1768280..1769164 (-) 885 WP_055028028.1 zinc ABC transporter substrate-binding protein ZnuA -
  EWA65_RS07915 znuC 1769247..1770035 (+) 789 WP_000212416.1 zinc ABC transporter ATP-binding protein ZnuC -
  EWA65_RS07920 znuB 1770028..1770810 (+) 783 WP_055035440.1 zinc ABC transporter permease subunit ZnuB -
  EWA65_RS07925 sucD 1770897..1771769 (-) 873 WP_000025475.1 succinate--CoA ligase subunit alpha -
  EWA65_RS07930 sucC 1771769..1772935 (-) 1167 WP_001048575.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1115 a.a.        Molecular weight: 126728.38 Da        Isoelectric Point: 7.1171

>NTDB_id=343699 EWA65_RS07905 WP_195707960.1 1764733..1768080(-) (tfoS) [Vibrio metoecus strain 08-2459]
MYRTLLYSFLLNLIFPSLVLALDKSMSVFYPLPIQEQGKVIVAQNLYLGTDGGIWMHDVHGKVMYFDGQNILPRRGSVLP
QTSSHIVYANSAFWTFEQHELFRTYPAGHKELMLSLTPGTQINQIGSSNGMIWMTDNDNFYSYEIRSGRVSTLSLHELYQ
LNSASTVVINDAQFLVSKWALATNVGVYLSDEQGFSHVKKSGKHFVQKLYFSHKRRELLVGSKRGALIIDIENKRSLPDR
IGSSHVLSMAETEKEYWVGTEEGLYVYSFITGKIVQLESNSNNEYALLGKKIYAMVNDFQGGMWIATDKGVFYYSLFGQQ
FTRYPTQALSNDGSKAQISKIKALNSDGDYLAITQQGLYNFNVADDLRKHLIYPGKVNDFAINGENIWIATDKGLARYNL
SRRSLDTPHLPLALLQTPVEHLTMDGSGNLWGSSNHQIWSYSIIQQSFVDYGSEWMVKQFSPSRITLLAAVEQGIVIGTE
HGAYSLFGKQIRFDFSSHRYGEIVQVAQNALGDVWIIGAYGVFLWHQDQPEAVPVELIEENIQPLCIAESKQGMWFISSQ
GISHYSDQGQLNKNFSAPYGLISHEFLPASCAIGEEKESSSLVIGSQLGIVKVNTEELAVSNLPNIQVMFSQVSVNHRPK
LLGYRTPHPLKIRYGDAISFQFGALPSARSQSLEYKLNDDQQWQRFDWALLSFDKLLPGKYRLKVRSANPIQRYRTEALF
DFEVMEPWYMTSVAIVGYVVALFGLLAVAFWWRTRMIVGANRKLKAQVDLKTSQLRHQSKIVLSNNHQLRKQLQLHHNLL
GKVLESVDPSLRHLSSYAKVRGWNEFDAPLNKVKQELAQLHFMHRGDAEESKFHDLHLLIESALKSWQEEYSKAAIKLIY
HGETRFIEVRQFNLDVLFNAILTDAIKRLYKYQELQIQLEARDEQAVLIFSDFGSPIQNLGSMLVTLTGFGTYPLQELIS
RSGGELRVLVLKERNVIELAWPLASIPEIESLKQEVVEIEQKSAIDDVEKEWLSKLEKLIEQNYSDPNFTTSTAAQSLYV
SERSLQRRFKAATGKTFKESLNELRLEKACQSLLSGAKIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQFIEDQES

Nucleotide


Download         Length: 3348 bp        

>NTDB_id=343699 EWA65_RS07905 WP_195707960.1 1764733..1768080(-) (tfoS) [Vibrio metoecus strain 08-2459]
GTGTATCGCACATTGTTATACAGCTTCTTGCTGAATCTTATTTTTCCTTCATTGGTGTTGGCTTTAGATAAGTCAATGTC
AGTTTTTTATCCTTTGCCAATCCAAGAGCAGGGGAAAGTCATTGTTGCTCAAAACCTCTATCTTGGTACGGATGGCGGGA
TCTGGATGCATGATGTGCATGGAAAAGTCATGTATTTTGATGGGCAAAATATCCTGCCCCGTCGTGGTTCTGTACTTCCG
CAAACGTCGAGTCACATTGTTTACGCAAATAGTGCTTTTTGGACATTTGAACAACATGAATTGTTTCGAACCTATCCTGC
GGGGCACAAGGAGTTGATGTTAAGCCTCACGCCAGGAACCCAAATCAATCAGATTGGCTCATCGAACGGTATGATCTGGA
TGACAGATAATGACAATTTCTACAGCTATGAAATTCGAAGTGGGCGAGTATCGACGCTTTCACTGCATGAGTTATATCAA
TTGAATAGTGCTAGTACGGTTGTCATAAATGATGCACAGTTCTTGGTTTCAAAGTGGGCGTTAGCGACGAATGTGGGTGT
TTATTTGTCTGACGAACAAGGCTTTTCTCATGTTAAGAAATCCGGAAAACATTTTGTTCAGAAGCTTTATTTCTCTCATA
AACGCCGAGAATTATTGGTTGGCTCTAAGCGCGGAGCGTTAATTATTGATATTGAAAACAAGCGCTCACTACCTGATCGA
ATTGGCTCATCGCATGTCCTATCCATGGCGGAAACAGAAAAAGAGTATTGGGTTGGCACCGAAGAGGGTCTTTATGTTTA
CTCCTTTATTACGGGAAAAATAGTTCAATTAGAAAGTAATAGTAATAATGAGTACGCTCTACTGGGTAAAAAAATCTATG
CGATGGTGAATGATTTTCAGGGGGGAATGTGGATCGCAACCGATAAAGGTGTGTTCTATTATTCTTTATTTGGGCAGCAG
TTTACGCGTTACCCTACTCAAGCATTATCGAACGACGGTAGTAAGGCACAGATCAGTAAAATCAAGGCATTAAACTCGGA
TGGTGATTATTTGGCCATCACACAGCAAGGGTTGTATAACTTCAATGTCGCTGATGATTTACGTAAACACCTCATCTATC
CCGGTAAGGTCAACGACTTTGCCATCAACGGTGAGAATATATGGATAGCAACAGACAAAGGATTAGCTCGTTATAATCTT
TCTCGTCGTAGTCTCGACACTCCTCATCTACCGCTAGCATTGCTACAAACACCAGTTGAACACCTCACTATGGACGGCAG
CGGTAACTTGTGGGGTTCAAGTAATCACCAGATTTGGTCATATTCAATCATTCAGCAAAGCTTTGTGGATTATGGTTCGG
AATGGATGGTTAAACAATTTTCACCATCTCGAATCACCCTTCTTGCCGCTGTAGAGCAAGGCATTGTTATTGGCACTGAG
CATGGCGCTTACTCTTTATTTGGAAAACAGATTCGTTTCGATTTCTCCAGTCATCGTTATGGTGAAATTGTGCAAGTGGC
GCAAAATGCCTTGGGTGATGTCTGGATTATTGGCGCTTATGGTGTTTTTTTGTGGCATCAAGATCAACCGGAAGCGGTAC
CAGTAGAATTAATTGAAGAGAATATTCAACCTCTGTGTATTGCTGAATCCAAACAAGGTATGTGGTTTATTTCATCGCAG
GGAATAAGCCACTATAGCGACCAAGGTCAATTGAATAAAAACTTTAGCGCCCCTTATGGTTTAATCAGCCATGAATTTCT
TCCCGCCTCTTGCGCAATCGGTGAAGAAAAAGAAAGTTCATCTCTGGTTATTGGTTCACAATTGGGAATAGTGAAAGTCA
ATACGGAAGAATTGGCAGTATCAAATTTACCAAATATTCAGGTTATGTTTAGCCAAGTGAGCGTTAACCATAGGCCTAAG
TTGTTGGGGTATCGTACCCCCCATCCTCTGAAGATTCGTTATGGCGATGCGATCAGTTTCCAGTTTGGGGCTTTGCCTTC
TGCGCGCAGCCAATCGTTAGAATACAAATTGAATGATGATCAACAGTGGCAACGATTTGATTGGGCTCTGTTGAGTTTTG
ATAAGTTATTACCCGGTAAATATCGCCTAAAAGTGCGTAGTGCAAACCCTATTCAGCGCTATCGAACGGAAGCATTGTTT
GATTTTGAAGTGATGGAGCCTTGGTACATGACTTCAGTGGCGATTGTTGGTTATGTTGTGGCTTTATTCGGGCTACTTGC
TGTGGCGTTTTGGTGGCGAACCCGCATGATTGTTGGCGCTAACCGAAAGTTAAAGGCGCAAGTTGATCTGAAAACGAGTC
AGTTGCGCCATCAAAGTAAAATAGTATTGAGCAATAACCATCAATTGCGAAAGCAACTACAACTTCACCACAATTTATTA
GGAAAGGTTTTAGAGAGCGTAGACCCATCATTACGGCACCTATCTTCGTATGCCAAAGTTCGAGGTTGGAATGAGTTTGA
CGCTCCCCTGAATAAAGTGAAGCAAGAATTGGCACAGTTGCACTTTATGCATCGTGGTGATGCAGAGGAGAGTAAGTTTC
ATGATTTACACTTACTGATCGAGTCAGCCTTAAAGAGTTGGCAGGAAGAGTACAGTAAAGCGGCAATCAAGCTTATTTAC
CATGGTGAAACTCGCTTTATCGAAGTCCGCCAATTTAATCTTGATGTACTGTTTAACGCGATTTTGACGGATGCGATTAA
ACGACTTTATAAATATCAAGAATTACAGATCCAACTAGAAGCGAGAGATGAACAAGCCGTTCTCATTTTTTCTGATTTTG
GTTCACCGATTCAAAACCTTGGTTCAATGTTGGTGACATTAACAGGTTTTGGCACCTATCCATTACAGGAACTCATTAGT
CGAAGTGGTGGGGAGCTGCGAGTATTAGTTCTGAAAGAGCGCAATGTGATTGAGCTCGCGTGGCCACTCGCCTCGATTCC
AGAGATCGAATCGCTCAAGCAAGAAGTGGTTGAAATCGAACAGAAGTCAGCCATTGATGATGTGGAAAAAGAGTGGTTGA
GTAAGCTGGAAAAGCTTATTGAGCAAAATTACAGTGATCCTAATTTTACAACATCAACGGCAGCACAATCCCTCTATGTT
TCCGAGCGTAGTTTGCAGCGTCGCTTCAAAGCCGCAACGGGAAAAACATTTAAAGAATCATTGAATGAGTTACGTTTGGA
GAAAGCCTGCCAGAGTTTATTGAGTGGGGCAAAAATTGCTCAAGTGGCCTTTGACTGTGGATTTAATGACCCTTCCTACT
TTAGCCAACGCTTTAAACATCACTTTGGTTTATCTCCGAGTCAATTTATTGAAGATCAAGAATCTTAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1035-1110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

81.452

100

0.815

Multiple sequence alignment