Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GB851_RS04480 Genome accession   NZ_CP045141
Coordinates   857638..858114 (-) Length   158 a.a.
NCBI ID   WP_032827749.1    Uniprot ID   -
Organism   Kingella kingae strain F41215CHC     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 852638..863114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB851_RS04440 (GB851_04585) - 852718..853287 (-) 570 WP_164538134.1 2-oxoglutarate dehydrogenase -
  GB851_RS04445 (GB851_04590) - 853317..853952 (-) 636 WP_164538373.1 BON domain-containing protein -
  GB851_RS04450 (GB851_04595) - 854083..854676 (-) 594 WP_003786775.1 phosphoheptose isomerase -
  GB851_RS04455 (GB851_04600) - 854682..855026 (-) 345 WP_003786777.1 YraN family protein -
  GB851_RS04460 (GB851_04605) tsaB 855029..855715 (-) 687 WP_164538135.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  GB851_RS04465 (GB851_04610) - 855791..856030 (-) 240 WP_241242535.1 DapH/DapD/GlmU-related protein -
  GB851_RS04470 (GB851_04615) - 856225..856830 (+) 606 WP_003786783.1 nitroreductase family protein -
  GB851_RS04475 (GB851_04620) - 856904..857641 (-) 738 WP_003786785.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  GB851_RS04480 (GB851_04625) luxS 857638..858114 (-) 477 WP_032827749.1 S-ribosylhomocysteine lyase Regulator
  GB851_RS04485 (GB851_04630) typA 858291..860108 (+) 1818 WP_003786789.1 translational GTPase TypA -
  GB851_RS04490 (GB851_04635) parC 860207..862480 (+) 2274 WP_038310763.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17962.46 Da        Isoelectric Point: 4.9630

>NTDB_id=343699 GB851_RS04480 WP_032827749.1 857638..858114(-) (luxS) [Kingella kingae strain F41215CHC]
MNITTEKRMNVESFNLDHTKVKAPYVRLACITDGDHGDIIYKYDLRVCQPNQDHMDMPSLHSLEHLMAELSRNHSDKIVD
ISPMGCQTGFYVTLLNLPEYQDALNLIEKTLRDVVVATEVPACNVVQCGWAASHSLEGAQKIAQYLLDNRVQWEEIFA

Nucleotide


Download         Length: 477 bp        

>NTDB_id=343699 GB851_RS04480 WP_032827749.1 857638..858114(-) (luxS) [Kingella kingae strain F41215CHC]
ATGAACATCACTACCGAAAAAAGAATGAACGTAGAGAGCTTTAATTTGGACCATACCAAAGTAAAAGCCCCCTATGTGCG
CCTTGCCTGCATCACAGATGGCGACCACGGTGATATTATCTATAAATACGACTTGCGCGTTTGCCAGCCCAATCAAGACC
ACATGGATATGCCGTCTTTGCATTCGCTGGAACATTTAATGGCAGAATTGTCGCGCAATCATTCCGATAAAATTGTGGAC
ATTAGCCCAATGGGTTGCCAAACAGGCTTTTATGTAACCTTGTTGAATTTGCCCGAATACCAAGACGCACTTAACTTAAT
TGAAAAAACACTACGCGATGTCGTAGTGGCGACCGAAGTCCCTGCTTGCAACGTAGTGCAATGCGGTTGGGCGGCAAGTC
ACAGTTTAGAAGGCGCACAAAAAATCGCGCAATATTTGCTCGATAATCGCGTACAATGGGAGGAAATTTTCGCATGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(10-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.972

91.139

0.373

Multiple sequence alignment