Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   EWA65_RS02935 Genome accession   NZ_CP035688
Coordinates   637152..638519 (+) Length   455 a.a.
NCBI ID   WP_081018466.1    Uniprot ID   -
Organism   Vibrio metoecus strain 08-2459     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 632152..643519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA65_RS02915 rsxB 632755..633342 (-) 588 WP_055027254.1 electron transport complex subunit RsxB -
  EWA65_RS02920 rsxA 633342..633923 (-) 582 WP_000141446.1 electron transport complex subunit RsxA -
  EWA65_RS02930 uvrB 634805..636835 (+) 2031 WP_055031979.1 excinuclease ABC subunit UvrB -
  EWA65_RS02935 luxO 637152..638519 (+) 1368 WP_081018466.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  EWA65_RS02940 luxU 638523..638864 (+) 342 WP_055031978.1 quorum-sensing phosphorelay protein LuxU -
  EWA65_RS02945 - 638847..639743 (-) 897 WP_000061074.1 YvcK family protein -
  EWA65_RS02950 moaA 640050..641039 (+) 990 WP_055027252.1 GTP 3',8-cyclase MoaA -
  EWA65_RS02955 moaB 641099..641611 (+) 513 WP_000509704.1 molybdenum cofactor biosynthesis protein B -
  EWA65_RS02960 moaC 641622..642101 (+) 480 WP_000080922.1 cyclic pyranopterin monophosphate synthase MoaC -
  EWA65_RS02965 moaD 642098..642343 (+) 246 WP_055027251.1 molybdopterin synthase sulfur carrier subunit -
  EWA65_RS02970 moaE 642345..642806 (+) 462 WP_055027250.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50920.16 Da        Isoelectric Point: 5.5459

>NTDB_id=343689 EWA65_RS02935 WP_081018466.1 637152..638519(+) (luxO) [Vibrio metoecus strain 08-2459]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESISRREPDLILLDLRLPDMTGMDVLHAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRHYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMPTPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQAWNEKVQEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=343689 EWA65_RS02935 WP_081018466.1 637152..638519(+) (luxO) [Vibrio metoecus strain 08-2459]
ATGGTAGAAGATACAGCGTCGGTGGCGGCGTTGTATCGCTCTTATCTCACCCCGCTGGATATTGATATCAATATCGTCGG
CACAGGGCGCGATGCAATTGAAAGCATCAGTCGCCGTGAGCCGGATCTGATCCTGCTTGATTTACGTTTACCGGATATGA
CGGGGATGGATGTCCTGCATGCAGTAAAAGAAAAATCACCAGATGTACCCATTGTGTTCATGACGGCGCACGGTTCAATT
GATACCGCGGTTGAAGCGATGCGCCATGGTGCTCAAGACTTTTTGATTAAGCCTTGTGAGGCGGATCGCTTGCGGGTCAC
GGTGAATAACGCGATCCGTAAAGCATCGAAACTCAAAAATGATGTCGATAATAAAAATCAGAACTATCAAGGCTTTATAG
GCAGTAGCCAAACCATGCAAGCGGTCTATCGCACAATAGACTCAGCGGCGAGCAGTAAAGCGAGTATTTTCATTACCGGT
GAAAGTGGTACAGGTAAAGAGGTGTGTGCCGAAGCGATTCACGCTGCGAGTAAACGTGGCGATAAACCGTTTATTGCCAT
TAACTGTGCCGCGATCCCGAAAGATCTGATTGAAAGTGAGTTGTTCGGCCACGTAAAAGGGGCTTTTACCGGTGCGGCGA
CTGAACGCCAAGGTGCTGCGGAAGCCGCTGATGGTGGCACGCTATTTTTGGATGAGTTGTGCGAAATGGATTTGGATTTA
CAAACTAAACTGCTGCGCTTTATCCAAACCGGAACATTCCAAAAAGTTGGCTCATCGAAAATGAAAAGCGTGGATGTGCG
CTTTGTGTGTGCGACCAACCGTGACCCCTGGAAAGAAGTGCAAGAAGGGCGTTTTCGTGAGGACTTGTACTACCGCTTGT
ATGTGATCCCACTGCACTTACCACCATTGCGCGAGCGTGGTGATGATGTGATAGAGATTGCCTACTCGCTGCTTGGCTTT
ATGTCCAAGGAAGAAGGGAAAGATTTTGTACGCTTGTCGGCCGAAGTGGTCGAGCGCTTTCGTCACTACGAGTGGCCGGG
TAACGTGCGTCAATTACAAAACGTTTTACGTAATGTCGTGGTACTGAATGAAGGCCGTGAAATCACGTTAGATATGCTCC
CGCCACCACTAAACCAAATGCCAACTCCGATCAATCGAGCTTTACCGCTCGCCCATGAAAACAAAGTGTCAGTGCATGAA
ATTTTCCCATTGTGGATGACGGAAAAACAGGCCATCGAGCAAGCTATTGAAGCGTGTGATGGTAACATCCCCCGCGCTGC
GACCTATCTGGATGTCAGTCCTTCAACCATTTATCGCAAGCTGCAAGCTTGGAATGAAAAAGTTCAAGAAAAAGAGAAGG
AGCGGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

98.242

100

0.982
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38

Multiple sequence alignment