Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   GB851_RS02030 Genome accession   NZ_CP045141
Coordinates   403590..407246 (+) Length   1218 a.a.
NCBI ID   WP_164538063.1    Uniprot ID   -
Organism   Kingella kingae strain F41215CHC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 398590..412246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB851_RS02010 (GB851_02105) - 399588..399791 (-) 204 WP_003785524.1 cold-shock protein -
  GB851_RS02015 (GB851_02110) clpS 399976..400278 (+) 303 WP_003789543.1 ATP-dependent Clp protease adapter ClpS -
  GB851_RS02020 (GB851_02115) clpC 400275..402548 (+) 2274 WP_003789545.1 ATP-dependent Clp protease ATP-binding subunit ClpA Regulator
  GB851_RS02025 (GB851_02120) - 402675..403580 (+) 906 WP_164538062.1 hypothetical protein -
  GB851_RS02030 (GB851_02125) recB 403590..407246 (+) 3657 WP_164538063.1 exodeoxyribonuclease V subunit beta Machinery gene
  GB851_RS02035 (GB851_02130) - 407400..407588 (+) 189 WP_003789551.1 hypothetical protein -
  GB851_RS02040 (GB851_02135) orn 407598..408146 (+) 549 WP_003789552.1 oligoribonuclease -
  GB851_RS02045 (GB851_02140) - 408290..409162 (+) 873 WP_038306893.1 YicC/YloC family endoribonuclease -
  GB851_RS02050 (GB851_02145) pheA 409600..410676 (+) 1077 WP_164538064.1 prephenate dehydratase -
  GB851_RS02055 (GB851_02150) metW 410741..411322 (-) 582 WP_003789557.1 methionine biosynthesis protein MetW -
  GB851_RS02060 (GB851_02155) - 411319..411651 (-) 333 WP_003785541.1 LYR motif-containing protein -

Sequence

Protein


Download         Length: 1218 a.a.        Molecular weight: 138086.06 Da        Isoelectric Point: 6.0709

>NTDB_id=343687 GB851_RS02030 WP_164538063.1 403590..407246(+) (recB) [Kingella kingae strain F41215CHC]
MSHDFTPLNVPLVATNLIEASAGTGKTWNISALFARLVLLEQMSVDKILVVTFTNAATAELKTRLRDRLGEALHVLHKMQ
APFGATEVQAACEQYAPKSADFMSKLVEQALQKESRERLMMRLKAALSQFDHAAIYTIHSFCQRVLQDFAFYCQVPFQIE
LDEDSTPSPIAAQDFWREQVAHHEQLAQIVYRHQKNPQQQAAALASFVGRTYLHTRPTAYTLRDWQAANEGFVRAWQDTA
NQLDAIESAWEKLQPSLPKNSYQPDDLKSYIQQCHDWKSAGCLPDVNIILKLFFNSKNENKFSLDTLTDKAKKDFKGKQD
PDALDCLSRTWGEWANHAQILSASEGDVLINVAMDLLHAIRQQNEADKQKQPARQFDDLLLDVFNALQTNRTHATALAQA
MSRTWQVVLIDEFQDTDPLQYGIFSRAFMQSSLHTENAPTVFMVGDPKQAIYNFRGADIFAYLQAAENVSPEQRYTLRTN
FRSHARLVNSVGALFAKPQPFVLPNLAYETVQAHRSNSHLSPQEAAVRVRWLNDLSLDKTEKTDTLQHTSAQWCASEIAY
ALHRAGQGELRLKDKPLHAGDMAVLVRTRQEGAMVQRELKRLNVQSVLLSRDSVFQEDEARAVYALLAFFLNPQQTAHLV
YVLAGCLFGYTAQQLWALQQDERALSEWADEASVALQKWQKVGVYAAVQHFLQQHDVIQNLLAAGNDRTLINLGQVLELL
AAEEESGRLPAALYQWLQQEIAATQDGDSNENRALRLESDEQLVKIVTMHASKGLQYPIVYCPFVWRGKGNKGDDWQVLQ
GESGSTLLHKNQMTDADKEQAQKERLSEDLRLLYVALTRAEEQLVLYLAAHENTHHHPFYYLLDGDAHKTWSGAKVPAHA
YRQIWQQFVQKQNAETTSFEWDETPQAALLWTQNGKSSLHIQSDSETVYQAQTVATRHYVPVVFSSFTALSSHQHAPEAL
ANTDEAERKWDIAVQAALPSETTSLPIQNDDIWDMAHFPRGAKAGVCLHELLEYFPFGQPAEKHSERIVRVLNRHQIADA
ENWLPAVCDMLDKVRQTPLVNGIRLCDLSRQEWLNEMAFLFEIEQFNLVDVQNWCKQMNLSPECVQAALSLTFRQLSGFL
NGFIDTLVYTQNQALVIDYKSNYLADYSPASLNPEIAKHHYYLQALIYAIATARYLRSRQCCPDVIAVRYVFLRGVDGSS
QQGVWACDVPVASLAMWL

Nucleotide


Download         Length: 3657 bp        

>NTDB_id=343687 GB851_RS02030 WP_164538063.1 403590..407246(+) (recB) [Kingella kingae strain F41215CHC]
ATGAGCCACGATTTCACGCCCCTAAACGTTCCCCTTGTTGCCACCAATTTGATTGAAGCCAGCGCAGGTACAGGCAAAAC
ATGGAATATTTCCGCCTTGTTTGCCCGATTGGTGCTGCTGGAACAAATGTCTGTGGACAAAATTTTGGTCGTTACGTTTA
CCAACGCCGCCACCGCCGAACTCAAAACCCGATTGCGCGACCGTTTGGGCGAAGCCTTGCACGTGTTGCACAAAATGCAA
GCTCCGTTTGGCGCAACCGAAGTGCAGGCTGCTTGCGAACAATACGCGCCCAAATCGGCAGATTTCATGAGCAAATTGGT
GGAACAAGCCCTGCAAAAAGAATCGCGCGAACGCTTAATGATGCGACTCAAAGCCGCGTTGAGCCAGTTTGACCACGCCG
CCATTTACACCATTCACAGCTTTTGTCAGCGCGTGTTGCAAGATTTCGCGTTTTATTGCCAAGTCCCTTTTCAAATTGAA
TTGGACGAAGACAGCACGCCCAGCCCGATTGCGGCGCAAGACTTTTGGCGCGAACAAGTGGCGCACCACGAACAACTGGC
GCAGATTGTGTATCGCCATCAAAAAAATCCACAGCAACAAGCCGCAGCATTGGCTTCGTTTGTGGGGCGAACTTATTTGC
ACACGCGCCCCACGGCATACACTTTGCGCGATTGGCAAGCAGCAAACGAAGGTTTTGTACGCGCATGGCAAGACACGGCA
AATCAGCTTGATGCGATTGAAAGCGCGTGGGAAAAATTGCAACCGAGTTTGCCCAAAAATAGCTATCAGCCCGATGATTT
AAAAAGCTATATCCAACAATGCCATGACTGGAAAAGTGCAGGCTGCTTGCCCGATGTAAACATTATTTTGAAGCTGTTTT
TTAATAGCAAAAACGAAAACAAATTCAGCCTTGACACGCTAACCGACAAAGCCAAAAAAGACTTCAAAGGCAAACAAGAC
CCTGATGCTTTGGACTGTTTAAGCCGCACTTGGGGCGAATGGGCAAACCACGCACAAATCTTGTCAGCCAGCGAAGGTGA
TGTGTTGATTAACGTGGCAATGGATTTGCTCCACGCTATTCGCCAGCAAAACGAAGCCGACAAACAAAAGCAGCCTGCAC
GTCAATTTGACGATTTATTACTAGACGTGTTCAACGCGCTGCAAACCAATCGCACCCATGCCACCGCGTTGGCACAAGCC
ATGTCGCGCACTTGGCAAGTGGTGCTGATTGACGAATTTCAAGACACCGACCCGTTGCAATATGGCATTTTTTCTCGCGC
CTTTATGCAAAGCAGCCTGCACACAGAAAACGCGCCCACCGTGTTTATGGTTGGCGACCCAAAACAGGCAATTTACAATT
TTCGTGGCGCGGACATTTTTGCCTATTTGCAAGCCGCAGAAAACGTGTCGCCCGAACAACGCTACACTTTGCGTACCAAT
TTCCGCAGCCATGCGCGATTGGTCAACAGCGTGGGTGCATTGTTCGCCAAACCGCAACCGTTTGTGTTGCCCAATTTGGC
ATACGAAACCGTGCAAGCGCATCGATCAAACAGCCATTTGTCGCCCCAAGAAGCGGCGGTGCGCGTGCGTTGGCTCAACG
ATTTAAGTTTGGATAAAACCGAAAAAACCGATACCTTGCAACACACGTCCGCCCAATGGTGCGCCAGTGAAATTGCCTAT
GCCTTGCATCGCGCAGGGCAGGGCGAATTGCGTTTAAAAGACAAACCGCTACACGCTGGCGATATGGCTGTGCTGGTGCG
AACCCGCCAAGAAGGCGCAATGGTGCAGCGCGAACTCAAACGCCTAAATGTGCAAAGCGTGTTGTTGAGCCGTGATAGCG
TGTTCCAAGAAGACGAAGCGCGTGCCGTGTATGCTTTGTTGGCATTTTTCTTGAATCCGCAGCAAACGGCGCATTTGGTT
TATGTACTTGCAGGCTGCTTGTTTGGCTACACCGCGCAACAGTTGTGGGCTTTGCAACAAGATGAACGCGCATTAAGCGA
ATGGGCAGACGAAGCGAGCGTTGCCTTACAAAAATGGCAAAAAGTGGGCGTGTATGCAGCGGTGCAACATTTTTTGCAGC
AACACGATGTCATCCAAAATCTGCTCGCTGCTGGCAACGACCGCACTTTGATCAATTTGGGGCAAGTGCTGGAATTGCTG
GCTGCCGAAGAAGAAAGCGGACGTTTGCCAGCCGCCTTGTATCAATGGTTGCAACAAGAAATCGCTGCCACGCAAGATGG
CGACAGTAACGAAAACCGCGCCTTGCGACTGGAAAGCGATGAGCAACTGGTTAAAATTGTAACCATGCATGCATCAAAAG
GCTTGCAATATCCGATTGTGTATTGCCCGTTTGTGTGGCGTGGCAAAGGCAACAAGGGCGACGATTGGCAAGTGTTGCAA
GGCGAATCGGGCAGCACTTTGTTGCACAAAAACCAAATGACCGATGCCGACAAAGAACAAGCGCAAAAAGAGCGGTTGTC
GGAAGATTTGCGTTTGCTGTATGTGGCTTTGACTCGCGCCGAAGAGCAATTGGTGCTGTATTTGGCGGCACACGAAAACA
CGCATCATCACCCGTTTTATTATTTGTTAGACGGTGATGCGCACAAAACATGGTCTGGTGCAAAAGTGCCAGCGCACGCC
TATCGCCAAATTTGGCAACAATTCGTACAGAAGCAAAACGCAGAAACTACCAGCTTTGAATGGGACGAAACACCGCAGGC
TGCTTTGTTGTGGACGCAAAACGGCAAAAGCAGCCTGCACATTCAGTCGGATAGCGAAACGGTTTATCAAGCGCAAACCG
TTGCCACGCGCCATTATGTGCCAGTTGTGTTTAGCAGTTTTACCGCGTTGAGTTCGCATCAACACGCGCCTGAAGCGTTG
GCAAACACAGACGAAGCCGAGCGCAAATGGGACATTGCGGTGCAGGCTGCTTTACCCAGCGAAACGACATCGTTACCAAT
CCAAAACGATGATATTTGGGACATGGCGCACTTTCCGCGTGGCGCAAAAGCAGGCGTGTGTTTGCACGAATTGCTGGAAT
ATTTTCCGTTTGGTCAGCCAGCCGAAAAACACAGCGAGCGCATTGTGCGCGTGTTGAATCGCCATCAAATTGCCGATGCC
GAAAACTGGTTGCCAGCCGTGTGCGATATGCTAGACAAAGTGCGCCAAACACCGCTGGTAAACGGCATACGTTTGTGCGA
TTTGTCGCGCCAAGAGTGGCTTAACGAAATGGCATTTTTGTTTGAAATAGAACAATTTAATTTGGTTGATGTGCAAAACT
GGTGCAAGCAAATGAACTTGTCGCCCGAATGTGTGCAGGCTGCTTTGTCGCTCACGTTCCGCCAGTTAAGCGGTTTTTTG
AATGGCTTTATTGACACGCTGGTTTACACGCAAAATCAAGCGTTGGTGATTGACTACAAATCCAATTATTTGGCGGATTA
TTCGCCTGCGTCGCTGAATCCAGAAATCGCCAAGCATCACTATTATTTGCAAGCCTTGATTTATGCGATTGCTACGGCGC
GTTATCTTCGTAGCCGCCAATGTTGCCCCGATGTGATTGCGGTACGCTATGTGTTTTTACGCGGCGTGGACGGCAGCAGC
CAACAAGGCGTGTGGGCGTGTGATGTGCCTGTGGCTTCGTTGGCGATGTGGTTGTGA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(14-468)

UvrD-like helicase C-terminal domain (UvrD_C)

(475-847)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria meningitidis MC58

43.25

100

0.439
  recB Neisseria gonorrhoeae strain FA1090

42.985

100

0.435
  recB Neisseria gonorrhoeae MS11

42.985

100

0.435