Detailed information NTG0343686

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: GB851_RS02020
• Genome accession: NZ_CP045141
• Coordinates: 400275..402548 (+)
• Length: 757 a.a.
• NCBI ID: WP_003789545.1
• Uniprot ID: -
• Organism: Kingella kingae strain F41215CHC
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 395275..407548

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GB851_RS01980 (GB851_02075)	-	395527..395733 (-)	207	WP_003785517.1	hypothetical protein	-
GB851_RS01985 (GB851_02080)	-	395839..396384 (+)	546	WP_003785518.1	RNA pyrophosphohydrolase	-
GB851_RS01990 (GB851_02085)	rpsT	396445..396708 (-)	264	WP_003785519.1	30S ribosomal protein S20	-
GB851_RS01995 (GB851_02090)	comP	396865..397347 (+)	483	WP_032828136.1	type IV pilin protein	Machinery gene
GB851_RS02000 (GB851_02095)	-	397412..398488 (-)	1077	WP_003789537.1	AI-2E family transporter	-
GB851_RS02005 (GB851_02100)	dusA	398492..399565 (-)	1074	WP_003789541.1	tRNA dihydrouridine(20/20a) synthase DusA	-
GB851_RS02010 (GB851_02105)	-	399588..399791 (-)	204	WP_003785524.1	cold-shock protein	-
GB851_RS02015 (GB851_02110)	clpS	399976..400278 (+)	303	WP_003789543.1	ATP-dependent Clp protease adapter ClpS	-
GB851_RS02020 (GB851_02115)	clpC	400275..402548 (+)	2274	WP_003789545.1	ATP-dependent Clp protease ATP-binding subunit ClpA	Regulator
GB851_RS02025 (GB851_02120)	-	402675..403580 (+)	906	WP_164538062.1	hypothetical protein	-
GB851_RS02030 (GB851_02125)	recB	403590..407246 (+)	3657	WP_164538063.1	exodeoxyribonuclease V subunit beta	Machinery gene

Sequence

Protein

• Length: 757 a.a.
• Molecular weight: 83900.45 Da
• Isoelectric Point: 6.3700

>NTDB_id=343686 GB851_RS02020 WP_003789545.1 400275..402548(+) (clpC) [Kingella kingae strain F41215CHC]
MISSQLEPILQAMYEEARISRHELVGLEHLLLALIQGDPNVADALREHSAEFSLLLAHLRESIDENTPTYPPHIPSHKID
PQPTIGFQRVVQRAMIHVQQSSQTEVQAADLLLALMQEEESPAVFLLQLHGVERKDLLRYFSHGTSSLHSSQHHDDDDDS
NLADNPLEAYTVNLNAEVQAARIDPLIGRKMEMERVLQILCRRRKNNPLLVGEAGVGKTALAEGLAYLIEQKQVPDVLAN
ATVFALDMGALLAGAKYRGDFEARLKAVLKELAKVENAVLFIDEIHTVIGAGSTQGNNMDASNLLKPALAKGQLRCIGAT
TYEEYRTVFNKDHALSRRFQKIDVVEPTVAETVQILQGLRPMFEQHHSVEYLDEAFQAAAELSAKYINERFLPDKAIDII
DEAGAAQRIALPENRLTQINKAEIERIVAKIARIPETTVSHDDKQVLKTLADTLKRKVFGQDNAIEALVSAVKMSRSGLG
LPEKPIGSFLFSGPTGVGKTEVAKQLALELGVPLQRFDMSEYMEAHAVSRLIGAPPGYVGFEQGGLLTECINKQPHCVLL
LDEIEKAHRDIYNVLLQVMDAGKLTDNTGRSADFRNVIIIMTTNAGAEALSKPSFGFTSKRERGDEMVDIKKLFTPEFRN
RLDAIIPFAPLSPEIIAKVVDKFLAQLAAQLADKKVVAEFGDAMRKHLAAKGFDPQMGARPMHRLIQEQIRKALADELLF
GKLTDGGFVLVDWDEKTQKAKLSFKKPRVSRKKAELA

Nucleotide

• Length: 2274 bp

>NTDB_id=343686 GB851_RS02020 WP_003789545.1 400275..402548(+) (clpC) [Kingella kingae strain F41215CHC]
ATGATTTCATCTCAATTAGAACCGATTTTGCAAGCCATGTATGAAGAGGCGCGTATCAGCCGTCATGAACTGGTGGGCTT
GGAGCATTTGCTGCTGGCTTTGATTCAGGGCGACCCCAATGTTGCCGATGCTTTGCGCGAACACAGCGCGGAATTTTCGT
TGCTGCTGGCACATTTGCGCGAAAGCATAGACGAAAACACGCCCACTTATCCGCCGCATATTCCCAGCCACAAGATTGAC
CCACAGCCGACTATTGGCTTTCAGCGCGTGGTGCAGCGAGCGATGATTCATGTGCAACAGTCATCGCAAACCGAAGTGCA
GGCTGCCGATTTGTTGCTGGCGTTGATGCAGGAAGAAGAATCTCCTGCGGTATTTTTATTGCAACTGCATGGCGTGGAGC
GCAAAGATTTGTTGCGCTATTTTTCGCATGGCACAAGCAGCCTGCACTCATCGCAGCATCATGATGATGACGATGACAGC
AATCTTGCCGATAATCCATTGGAAGCCTACACCGTAAACCTGAATGCCGAAGTGCAGGCTGCTCGCATTGACCCCTTAAT
CGGGCGCAAAATGGAAATGGAACGCGTATTGCAAATTCTGTGTCGCCGCCGCAAAAATAATCCGCTTTTGGTTGGCGAAG
CTGGCGTAGGTAAAACCGCGTTGGCGGAGGGGTTGGCGTATTTAATTGAACAAAAACAAGTACCTGACGTGTTGGCAAAT
GCAACTGTTTTCGCGTTGGATATGGGCGCGTTGTTGGCTGGTGCGAAATATCGTGGCGATTTTGAAGCGCGTTTGAAAGC
GGTGCTGAAAGAATTGGCAAAAGTGGAAAATGCGGTTTTATTTATTGATGAAATTCATACGGTTATCGGTGCAGGCAGCA
CGCAAGGCAACAATATGGACGCGAGTAATTTGCTCAAACCTGCGTTGGCGAAAGGGCAACTGCGCTGCATTGGCGCGACC
ACTTACGAAGAATATCGCACCGTGTTCAACAAAGACCACGCGCTGAGTCGCCGTTTTCAAAAAATTGATGTGGTTGAGCC
GACTGTGGCGGAAACGGTGCAAATTTTGCAAGGTTTGCGCCCGATGTTTGAGCAACATCACAGCGTTGAATATTTGGACG
AGGCGTTTCAGGCAGCCGCCGAATTGTCGGCAAAATACATCAACGAGCGTTTTTTGCCTGACAAAGCCATTGATATTATT
GACGAAGCAGGCGCGGCGCAACGAATCGCGCTGCCTGAAAATCGTTTAACGCAAATCAATAAAGCGGAAATTGAACGCAT
TGTCGCCAAAATCGCCCGAATCCCTGAAACAACGGTTTCGCATGATGACAAACAGGTTTTGAAAACGCTTGCCGATACGC
TGAAACGCAAAGTTTTTGGGCAGGATAATGCGATTGAAGCGCTGGTTTCTGCTGTGAAAATGTCGCGTTCGGGTTTGGGG
CTGCCTGAAAAACCGATTGGCAGTTTTTTGTTTAGCGGTCCGACTGGCGTGGGCAAGACGGAAGTGGCGAAACAGTTGGC
GTTGGAATTGGGTGTACCGTTGCAACGCTTTGATATGTCTGAATATATGGAAGCGCATGCGGTTTCGCGTTTGATTGGTG
CGCCACCAGGCTATGTGGGTTTTGAACAAGGCGGTTTGCTGACGGAATGTATTAACAAACAGCCACATTGCGTTTTGCTG
TTGGACGAAATTGAGAAAGCGCACCGCGATATTTACAATGTGTTGCTGCAAGTGATGGACGCGGGCAAATTGACGGACAA
CACGGGACGCAGCGCGGATTTTCGCAATGTCATCATCATCATGACAACCAACGCAGGTGCGGAAGCGTTGAGCAAACCGA
GTTTTGGTTTTACCAGCAAACGCGAACGCGGCGATGAAATGGTGGACATCAAAAAATTGTTTACGCCTGAATTTCGCAAT
CGTTTAGATGCGATTATTCCGTTTGCGCCATTGTCGCCTGAAATCATTGCGAAAGTGGTAGATAAATTTTTGGCGCAGTT
GGCGGCGCAGTTGGCGGACAAAAAAGTGGTGGCGGAGTTTGGCGATGCGATGCGTAAACATTTGGCGGCAAAAGGTTTTG
ACCCACAAATGGGCGCACGTCCTATGCACCGTTTGATTCAAGAGCAAATTCGTAAGGCGTTGGCTGATGAGTTGCTGTTT
GGCAAATTGACGGACGGTGGTTTTGTGTTGGTGGATTGGGACGAGAAGACGCAGAAAGCGAAATTGTCGTTTAAAAAACC
GCGAGTTAGCCGCAAGAAAGCGGAATTGGCGTAA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (349-451)

• AAA domain (Cdc48 subfamily) (AAA_2) (484-645)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-46)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (111-138)

• ATPase family associated with various cellular activities (AAA) (AAA) (209-340)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (651-730)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	37.944	100	0.41
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	43.662	93.791	0.41