Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   GB851_RS01995 Genome accession   NZ_CP045141
Coordinates   396865..397347 (+) Length   160 a.a.
NCBI ID   WP_032828136.1    Uniprot ID   -
Organism   Kingella kingae strain F41215CHC     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 391865..402347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB851_RS01965 (GB851_02060) mltB 393731..394843 (-) 1113 WP_003789531.1 lytic murein transglycosylase B -
  GB851_RS01975 (GB851_02070) - 395135..395530 (-) 396 WP_038311131.1 VanZ family protein -
  GB851_RS01980 (GB851_02075) - 395527..395733 (-) 207 WP_003785517.1 hypothetical protein -
  GB851_RS01985 (GB851_02080) - 395839..396384 (+) 546 WP_003785518.1 RNA pyrophosphohydrolase -
  GB851_RS01990 (GB851_02085) rpsT 396445..396708 (-) 264 WP_003785519.1 30S ribosomal protein S20 -
  GB851_RS01995 (GB851_02090) comP 396865..397347 (+) 483 WP_032828136.1 type IV pilin protein Machinery gene
  GB851_RS02000 (GB851_02095) - 397412..398488 (-) 1077 WP_003789537.1 AI-2E family transporter -
  GB851_RS02005 (GB851_02100) dusA 398492..399565 (-) 1074 WP_003789541.1 tRNA dihydrouridine(20/20a) synthase DusA -
  GB851_RS02010 (GB851_02105) - 399588..399791 (-) 204 WP_003785524.1 cold-shock protein -
  GB851_RS02015 (GB851_02110) clpS 399976..400278 (+) 303 WP_003789543.1 ATP-dependent Clp protease adapter ClpS -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17920.48 Da        Isoelectric Point: 9.1760

>NTDB_id=343685 GB851_RS01995 WP_032828136.1 396865..397347(+) (comP) [Kingella kingae strain F41215CHC]
MAKNRNVASYRSAGFTLMEVLVAVAIVGILVAFAYPMYQESVKKGRLSDAQKALLDNAQAWERHYASHGNFRKTSRLWID
LPIRETDFFCIRPQGAPRGATHDGQFAFKAVALNKQQEPRALILNQDLTMLLCESTTSACSETDFFANPSRADKNCRAYP

Nucleotide


Download         Length: 483 bp        

>NTDB_id=343685 GB851_RS01995 WP_032828136.1 396865..397347(+) (comP) [Kingella kingae strain F41215CHC]
ATGGCTAAAAATAGAAATGTTGCGTCTTACCGTTCGGCTGGATTCACGTTAATGGAAGTGTTGGTGGCAGTGGCAATCGT
GGGGATTTTGGTGGCGTTTGCGTATCCGATGTATCAAGAATCGGTAAAAAAAGGGCGGTTGAGCGATGCACAAAAGGCCT
TGCTGGATAACGCACAGGCATGGGAGCGTCATTACGCATCGCATGGCAATTTCCGTAAAACATCGCGCTTGTGGATTGAT
TTGCCGATTCGGGAAACGGACTTTTTTTGTATTCGTCCGCAAGGTGCGCCGCGTGGTGCAACACATGACGGGCAATTTGC
GTTTAAGGCGGTTGCGCTGAATAAACAGCAAGAACCACGTGCTTTGATTTTGAATCAGGATTTGACGATGTTGCTGTGCG
AAAGTACGACATCGGCATGCAGCGAAACCGATTTTTTTGCGAACCCTAGTCGTGCGGATAAAAATTGTCGAGCATATCCG
TAA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(36-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(11-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

39.726

91.25

0.362

Multiple sequence alignment