Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   EWA65_RS01100 Genome accession   NZ_CP035688
Coordinates   218521..219132 (-) Length   203 a.a.
NCBI ID   WP_000340092.1    Uniprot ID   -
Organism   Vibrio metoecus strain 08-2459     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 213521..224132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA65_RS01070 sspB 213643..214107 (+) 465 WP_055027857.1 ClpXP protease specificity-enhancing factor -
  EWA65_RS01075 - 214181..214750 (-) 570 WP_000835997.1 BON domain-containing protein -
  EWA65_RS01080 - 214753..215343 (-) 591 WP_000887295.1 phosphoheptose isomerase -
  EWA65_RS01085 - 215347..215715 (-) 369 WP_000508147.1 YraN family protein -
  EWA65_RS01090 - 215702..217507 (-) 1806 WP_001015485.1 penicillin-binding protein activator -
  EWA65_RS01095 rsmI 217577..218443 (+) 867 WP_055033952.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EWA65_RS01100 hapR 218521..219132 (-) 612 WP_000340092.1 quorum-sensing master transcriptional regulator HapR Regulator
  EWA65_RS01105 hpt 219426..219959 (+) 534 WP_000683344.1 hypoxanthine phosphoribosyltransferase -
  EWA65_RS01110 can 220048..220716 (-) 669 WP_154138629.1 carbonate dehydratase -
  EWA65_RS01115 - 220863..222515 (+) 1653 WP_095456787.1 SulP family inorganic anion transporter -
  EWA65_RS01120 - 222694..223611 (+) 918 WP_000271058.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23689.36 Da        Isoelectric Point: 6.6352

>NTDB_id=343685 EWA65_RS01100 WP_000340092.1 218521..219132(-) (hapR) [Vibrio metoecus strain 08-2459]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLDVKSNLQTLCKEMVKLTMNDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIKNMFIKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGDQEAVYKLVDSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=343685 EWA65_RS01100 WP_000340092.1 218521..219132(-) (hapR) [Vibrio metoecus strain 08-2459]
ATGGACGCATCAATCGAAAAACGCCCTCGAACTCGGCTGTCGCCACAAAAACGTAAACTGCAACTGATGGAAATCGCATT
AGAAGTGTTTGCAAAGCGTGGTATAGGCCGCGGTGGTCACGCAGACATCGCAGAGATTGCGCAAGTCTCAGTAGCAACGG
TGTTTAACTACTTTCCAACTCGCGAAGACTTAGTCGACGATGTACTGAATTTTGTGGTTCGCCAATATTCCAACTTCCTC
ACCGATCACATCGACCTGGACTTGGATGTTAAAAGCAACCTACAAACTTTGTGCAAAGAGATGGTCAAACTGACCATGAA
CGACTGCCATTGGCTAAAAGTATGGTTTGAATGGAGCGCATCGACTCGTGATGAGGTATGGCCGTTGTTTGTTTCGACGA
ACCGTACTAATCAGCTACTGATCAAAAACATGTTCATCAAAGCCATGGAGCGTGGTGAGTTGTGTGAAAAACACGATGTA
GACAATATGGCGAGCTTGTTCCACGGCATCTTCTACTCCATCTTCTTGCAAGTAAACCGCTTAGGTGATCAGGAAGCCGT
GTATAAATTGGTCGATAGCTATCTCAATATGTTGTGTATCTACAAAAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

96.552

100

0.966
  hapR Vibrio cholerae strain A1552

96.552

100

0.966
  opaR Vibrio parahaemolyticus RIMD 2210633

73.232

97.537

0.714

Multiple sequence alignment