Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   EPB59_RS14965 Genome accession   NZ_CP035687
Coordinates   315385..316479 (-) Length   364 a.a.
NCBI ID   WP_055049973.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1169     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 310385..321479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB59_RS14945 - 310861..311259 (+) 399 WP_154173563.1 YgiW/YdeI family stress tolerance OB fold protein -
  EPB59_RS14950 - 311470..311988 (+) 519 WP_055049970.1 hypothetical protein -
  EPB59_RS14955 - 312138..312803 (+) 666 WP_095458328.1 PilZ domain-containing protein -
  EPB59_RS14960 luxQ 312795..315365 (-) 2571 WP_154173565.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  EPB59_RS14965 luxP 315385..316479 (-) 1095 WP_055049973.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  EPB59_RS14970 traF 316688..317848 (-) 1161 WP_154173567.1 conjugal transfer protein TraF -
  EPB59_RS14975 - 317949..318254 (-) 306 WP_055033677.1 GIY-YIG nuclease family protein -
  EPB59_RS14980 - 318254..318904 (-) 651 WP_055033678.1 YceH family protein -
  EPB59_RS14985 - 318946..319143 (-) 198 WP_001222790.1 hypothetical protein -
  EPB59_RS14990 - 319331..319651 (+) 321 WP_001089529.1 DUF496 family protein -
  EPB59_RS15000 - 320064..320315 (+) 252 WP_009355552.1 YgjV family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41534.37 Da        Isoelectric Point: 6.6181

>NTDB_id=343674 EPB59_RS14965 WP_055049973.1 315385..316479(-) (luxP) [Vibrio metoecus strain 2011V-1169]
MKKKLMFSLLLTAALFSTEGYTSSLKGYWHYDDFLAKYPEQHQLTDQLAKMVREKPIPLGVEQKQPIVISVVYPGQQISD
YWVRNIKAFEKRMDELGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLQSSQTKLILQNI
TTPVKDWQGRQPMMYIGFDHELGAQQLAKQYQLIAPNKPYSVLYFSEGYISEARGDTFIQEMNEAHRFQLASSYYTKATE
QSGYEATLNIVKSNPEIGFIYACATDIALGAAQALKELGRQDILLNGWGGGSAELEALAKGELNMTVMRMNDDTGVAMAE
AIKWDLEGKTVPLVYSGDFEIVTQQDSTQHVEALKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=343674 EPB59_RS14965 WP_055049973.1 315385..316479(-) (luxP) [Vibrio metoecus strain 2011V-1169]
ATGAAAAAAAAGCTAATGTTCTCGCTGCTTCTAACTGCAGCACTCTTCAGCACAGAAGGCTATACCAGTTCACTCAAAGG
TTATTGGCATTACGATGATTTTCTCGCGAAGTACCCAGAACAACATCAGTTGACGGATCAACTGGCGAAAATGGTTCGCG
AAAAACCGATCCCACTTGGTGTTGAGCAAAAACAACCGATCGTGATTTCTGTCGTCTATCCTGGACAACAAATCTCAGAC
TATTGGGTTCGTAACATTAAAGCTTTTGAAAAAAGGATGGATGAGCTCGGTATTCGCTACCAAATTAATCAAGTCTTTAC
TCGCCCTAATCTGGATACTCGTCAACAAAGTGTTTCATTAATGGAAGCACTGAAAAATAAAAGCGATTATCTGATTTTTA
CGCTAGATACGACGCGTCATCGTAAGTTTATTGAGCACGTATTACAGTCTTCACAGACCAAACTGATATTACAAAACATC
ACAACACCAGTGAAAGATTGGCAAGGCCGACAACCTATGATGTATATCGGCTTCGACCATGAGTTAGGTGCGCAGCAATT
AGCGAAACAATACCAATTGATAGCACCGAACAAACCATACTCGGTACTTTATTTCTCTGAGGGGTACATCAGTGAAGCGC
GCGGAGATACCTTTATTCAAGAAATGAATGAAGCGCACCGTTTTCAACTTGCTTCTTCCTATTACACTAAGGCTACCGAA
CAAAGTGGGTATGAGGCGACCTTGAACATCGTTAAAAGTAACCCAGAAATTGGTTTTATCTATGCGTGTGCCACAGACAT
TGCTTTGGGCGCAGCCCAAGCATTAAAAGAGCTAGGGCGACAGGATATTCTACTCAATGGTTGGGGTGGGGGATCTGCGG
AATTAGAGGCGTTGGCAAAAGGCGAACTCAATATGACCGTGATGCGTATGAACGATGATACGGGAGTTGCGATGGCAGAA
GCGATTAAATGGGATCTTGAAGGTAAAACGGTACCTTTGGTGTATTCCGGTGATTTTGAAATCGTGACTCAGCAAGACTC
GACTCAACACGTTGAAGCGCTGAAAGCCCGCGCGTTCCGTTATTCGGATCGCTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

82.967

100

0.83

Multiple sequence alignment