Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   EPB59_RS09870 Genome accession   NZ_CP035686
Coordinates   2194854..2195465 (+) Length   203 a.a.
NCBI ID   WP_000340092.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1169     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2189854..2200465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB59_RS09850 - 2190366..2191283 (-) 918 WP_000271060.1 ABC transporter ATP-binding protein -
  EPB59_RS09855 - 2191474..2193126 (-) 1653 WP_154172566.1 SulP family inorganic anion transporter -
  EPB59_RS09860 can 2193273..2193941 (+) 669 WP_001114114.1 carbonate dehydratase -
  EPB59_RS09865 hpt 2194027..2194560 (-) 534 WP_000683344.1 hypoxanthine phosphoribosyltransferase -
  EPB59_RS09870 hapR 2194854..2195465 (+) 612 WP_000340092.1 quorum-sensing master transcriptional regulator HapR Regulator
  EPB59_RS09875 rsmI 2195544..2196410 (-) 867 WP_154172568.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EPB59_RS09880 - 2196480..2198285 (+) 1806 WP_154173211.1 penicillin-binding protein activator -
  EPB59_RS09885 - 2198317..2198640 (+) 324 WP_233420235.1 YraN family protein -
  EPB59_RS09890 - 2198644..2199234 (+) 591 WP_000887295.1 phosphoheptose isomerase -
  EPB59_RS09895 - 2199237..2199806 (+) 570 WP_154172570.1 BON domain-containing protein -
  EPB59_RS09900 sspB 2199876..2200340 (-) 465 WP_055051713.1 ClpXP protease specificity-enhancing factor -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23689.36 Da        Isoelectric Point: 6.6352

>NTDB_id=343654 EPB59_RS09870 WP_000340092.1 2194854..2195465(+) (hapR) [Vibrio metoecus strain 2011V-1169]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLDVKSNLQTLCKEMVKLTMNDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIKNMFIKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGDQEAVYKLVDSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=343654 EPB59_RS09870 WP_000340092.1 2194854..2195465(+) (hapR) [Vibrio metoecus strain 2011V-1169]
ATGGACGCATCAATCGAAAAACGCCCTCGAACTCGGCTATCTCCACAAAAACGTAAACTGCAACTGATGGAAATCGCATT
AGAAGTGTTTGCAAAGCGTGGAATAGGCCGCGGTGGTCACGCAGACATCGCAGAGATTGCGCAAGTCTCAGTAGCAACGG
TGTTTAACTACTTTCCTACTCGCGAAGACTTAGTCGACGATGTACTGAACTTTGTGGTTCGCCAATACTCCAACTTCCTC
ACCGATCACATCGATTTGGACTTGGATGTTAAAAGTAACCTACAAACATTGTGCAAAGAGATGGTCAAACTGACCATGAA
CGACTGCCATTGGCTAAAAGTATGGTTTGAATGGAGCGCATCGACTCGTGATGAGGTATGGCCGTTATTTGTTTCGACGA
ACCGTACTAATCAGCTACTGATCAAAAACATGTTCATCAAAGCCATGGAGCGTGGTGAATTGTGTGAAAAGCACGATGTA
GACAATATGGCGAGCTTGTTCCACGGCATTTTCTACTCCATCTTCTTGCAAGTAAACCGCTTGGGTGATCAAGAAGCCGT
GTATAAATTGGTCGATAGCTATCTCAATATGTTGTGTATCTACAAAAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

96.552

100

0.966
  hapR Vibrio cholerae strain A1552

96.552

100

0.966
  opaR Vibrio parahaemolyticus RIMD 2210633

73.232

97.537

0.714

Multiple sequence alignment