Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   EPB59_RS08030 Genome accession   NZ_CP035686
Coordinates   1772599..1773966 (-) Length   455 a.a.
NCBI ID   WP_081017668.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1169     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1767599..1778966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB59_RS07995 moaE 1768312..1768773 (-) 462 WP_154172203.1 molybdopterin synthase catalytic subunit MoaE -
  EPB59_RS08000 moaD 1768775..1769020 (-) 246 WP_154172204.1 molybdopterin synthase sulfur carrier subunit -
  EPB59_RS08005 moaC 1769017..1769496 (-) 480 WP_195706956.1 cyclic pyranopterin monophosphate synthase MoaC -
  EPB59_RS08010 moaB 1769507..1770019 (-) 513 WP_000509704.1 molybdenum cofactor biosynthesis protein B -
  EPB59_RS08015 moaA 1770079..1771068 (-) 990 WP_195706957.1 GTP 3',8-cyclase MoaA -
  EPB59_RS08020 - 1771375..1772271 (+) 897 WP_055050479.1 YvcK family protein -
  EPB59_RS08025 luxU 1772254..1772595 (-) 342 WP_055050478.1 quorum-sensing phosphorelay protein LuxU -
  EPB59_RS08030 luxO 1772599..1773966 (-) 1368 WP_081017668.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  EPB59_RS08035 uvrB 1774283..1776313 (-) 2031 WP_154172211.1 excinuclease ABC subunit UvrB -
  EPB59_RS08045 rsxA 1777195..1777776 (+) 582 WP_000141446.1 electron transport complex subunit RsxA -
  EPB59_RS08050 rsxB 1777776..1778363 (+) 588 WP_000104491.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50918.14 Da        Isoelectric Point: 5.5459

>NTDB_id=343650 EPB59_RS08030 WP_081017668.1 1772599..1773966(-) (luxO) [Vibrio metoecus strain 2011V-1169]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESISRREPDLILLDLRLPDMTGMDVLHAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRHYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMPAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQAWNEKVQEKERER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=343650 EPB59_RS08030 WP_081017668.1 1772599..1773966(-) (luxO) [Vibrio metoecus strain 2011V-1169]
ATGGTAGAAGATACAGCGTCGGTGGCGGCGTTGTATCGCTCCTATCTCACCCCGTTGGATATTGATATCAATATCGTCGG
CACAGGGCGCGATGCAATTGAAAGCATCAGTCGTCGTGAGCCGGATCTGATCCTGCTCGATTTACGTTTACCGGATATGA
CGGGGATGGATGTCCTGCATGCGGTAAAAGAAAAATCACCGGATGTGCCTATCGTGTTCATGACGGCGCACGGTTCAATT
GATACAGCGGTTGAAGCGATGCGCCACGGCGCTCAAGACTTTTTGATTAAGCCTTGTGAAGCGGATCGTCTACGCGTAAC
GGTGAATAATGCGATCCGTAAAGCGTCGAAACTCAAAAACGATGTCGATAATAAAAATCAGAACTATCAAGGCTTTATCG
GAAGTAGCCAAACCATGCAAGCGGTCTATCGCACAATAGACTCAGCGGCGAGCAGTAAAGCGAGTATTTTTATTACGGGT
GAAAGTGGTACCGGTAAGGAAGTGTGCGCGGAGGCGATTCACGCTGCGAGTAAACGTGGCGATAAACCGTTTATTGCCAT
TAACTGCGCCGCGATCCCGAAAGATCTGATTGAAAGTGAGTTGTTCGGCCACGTCAAAGGCGCTTTTACCGGTGCGGCGA
CTGAACGCCAAGGCGCTGCGGAAGCCGCTGATGGTGGCACACTGTTTTTGGATGAATTGTGCGAAATGGATTTGGATTTA
CAGACCAAACTGCTGCGCTTCATCCAAACCGGAACCTTCCAAAAAGTCGGCTCATCGAAAATGAAAAGCGTGGATGTGCG
CTTTGTGTGTGCGACCAACCGTGACCCATGGAAAGAGGTGCAAGAAGGCCGTTTTCGTGAAGACTTGTATTACCGCTTAT
ATGTGATCCCTCTGCACTTACCGCCATTGCGCGAGCGTGGTGATGATGTGATTGAGATTGCCTACTCGCTGCTTGGTTTT
ATGTCCAAAGAAGAGGGGAAAGATTTCGTCCGCTTGTCGGCCGAAGTGGTCGAGCGCTTCCGTCACTACGAGTGGCCGGG
TAACGTGCGCCAGCTACAAAACGTTTTGCGTAATGTCGTGGTACTGAATGAAGGCCGTGAAATCACGTTAGATATGCTCC
CACCACCACTAAACCAAATGCCAGCACCGATCAATCGAGCTTTACCGCTCGCCCATGAAAACAAAGTGTCGGTGCATGAA
ATTTTTCCATTGTGGATGACTGAGAAACAAGCTATTGAGCAAGCCATTGAAGCTTGTGATGGTAATATCCCCCGCGCCGC
GACCTATCTGGATGTCAGTCCTTCAACCATTTATCGCAAGCTGCAAGCTTGGAATGAAAAAGTTCAAGAAAAAGAGAGGG
AGCGGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

98.242

100

0.982
  pilR Pseudomonas aeruginosa PAK

38.496

99.341

0.382

Multiple sequence alignment