Detailed information NTG0343647

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: EPB59_RS06845
• Genome accession: NZ_CP035686
• Coordinates: 1521977..1523401 (+)
• Length: 474 a.a.
• NCBI ID: WP_154172001.1
• Uniprot ID: -
• Organism: Vibrio metoecus strain 2011V-1169
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1516977..1528401

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EPB59_RS06825	-	1517454..1518239 (-)	786	WP_000718967.1	adenosylcobinamide-GDP ribazoletransferase	-
EPB59_RS06830	cobT	1518239..1519264 (-)	1026	WP_154171995.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
EPB59_RS06835	msrB	1519696..1520142 (-)	447	WP_154171997.1	peptide-methionine (R)-S-oxide reductase MsrB	-
EPB59_RS06840	-	1520456..1521829 (+)	1374	WP_154171999.1	L-cystine transporter	-
EPB59_RS06845	sbcB	1521977..1523401 (+)	1425	WP_154172001.1	exodeoxyribonuclease I	Machinery gene
EPB59_RS06850	-	1523433..1523807 (+)	375	WP_195706939.1	CidA/LrgA family protein	-
EPB59_RS06855	-	1523798..1524475 (+)	678	WP_055027176.1	LrgB family protein	-
EPB59_RS06860	cdd	1524641..1525528 (+)	888	WP_154172005.1	cytidine deaminase	-
EPB59_RS06865	-	1525687..1526562 (+)	876	WP_154172007.1	AEC family transporter	-
EPB59_RS06870	purT	1526715..1527890 (+)	1176	WP_195706940.1	phosphoribosylglycinamide formyltransferase 2	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54647.02 Da
• Isoelectric Point: 5.9837

>NTDB_id=343647 EPB59_RS06845 WP_154172001.1 1521977..1523401(+) (sbcB) [Vibrio metoecus strain 2011V-1169]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSHGLSEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVIRACHALRPEGMEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKLKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLDLDAEALQARLYTRYEDLAPDELPIPVKLVHLNKCPILAPAKTLTAENAE
KIGIDREQCLAHLNVIRQHPEIREKLVSVFSQEREFAKENNVDSQLYDGFFSPADRAAMDIIRTTAPENLGNLDIKVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLESYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide

• Length: 1425 bp

>NTDB_id=343647 EPB59_RS06845 WP_154172001.1 1521977..1523401(+) (sbcB) [Vibrio metoecus strain 2011V-1169]
ATGCAGCAAGAACACCAGCCCACTTTTTTCTTTTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAGGATCGTCCAAG
TCAGTTTGCGGGTGTTCGTACCGATATGGATTTCAACATTATTGGTGAGCCTCTGGTCATTTACTGCCAATTGCCCAATG
ATTATTTACCTGCACCTGAAGCGGCACTGATTACCGGCATTACTCCACAAAAGGCGAATAGCCACGGCTTGTCAGAGCCA
GAATTCATCGCCCGAATCCACGCAGAGCTTTCCACGCCGAATACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
TGAAGTGACGCGCTACACCTGTTATCGCAACTTTATCGACCCGTATGCATGGAGCTGGCAACACGGTAATTCACGCTGGG
ATCTACTGGATGTGATCCGCGCTTGTCATGCTCTGCGCCCTGAAGGCATGGAATGGCCAGAAAATGAAGATGGCTTTACC
AGCTTCAAACTAGAACACCTTTCTGTTGCCAACGGCATTGAACACAGCAACGCACACGATGCCATGGCCGATGTGATTGC
CACGATTGAATTGGCGAAAAAGCTCAAAGCCGCGCAGCCTAAGTTATTCGACTATTTTTTTAACATGCGCCACAAACGCA
AGCTGACTGAGCTGATTGATATCGTTAACCAAACCCCGCTGATGCATGTTTCCGGCATGCTTGGCCGTGAACGTCAGTAC
ACCAGTTGGATTGTGCCGATTGCTTGGCATCCGACCAACCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCACTACTGGATCTGGATGCAGAAGCGTTGCAAGCGCGCCTCTATACACGCTATGAAGACTTAGCGCCCGATGAACTGC
CGATTCCTGTGAAGTTAGTACATCTCAACAAATGCCCAATTCTGGCTCCGGCCAAAACCTTAACCGCAGAGAATGCCGAA
AAGATTGGTATTGATCGCGAGCAGTGTCTTGCGCATTTGAATGTGATTCGCCAACATCCAGAAATTCGTGAAAAGCTTGT
CTCAGTGTTCAGTCAAGAACGTGAGTTTGCCAAGGAAAACAATGTAGATAGCCAATTGTATGATGGTTTTTTCTCTCCTG
CCGATCGCGCAGCGATGGATATCATTCGAACCACTGCTCCGGAAAACCTCGGAAACCTTGACATAAAAGTGGCAGATAAA
CGGATTGAACCACTTCTTTTTCGTTACCGCGCACGCCATTATCCACATACCTTAACCGATGCCGAACAACGGCGTTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAAGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTAGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	94.515	100	0.945