Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ET951_RS16075 Genome accession   NZ_CP035683
Coordinates   244385..245554 (-) Length   389 a.a.
NCBI ID   WP_148555408.1    Uniprot ID   -
Organism   Vibrio mimicus strain 2011V-1073     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 239385..250554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS16070 cqsS 242242..244302 (+) 2061 WP_080551345.1 hybrid sensor histidine kinase/response regulator Regulator
  ET951_RS16075 cqsA 244385..245554 (-) 1170 WP_148555408.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ET951_RS16080 - 245751..246713 (-) 963 WP_001104794.1 TDT family transporter -
  ET951_RS16085 clcA 246813..248219 (-) 1407 WP_154113967.1 H(+)/Cl(-) exchange transporter ClcA -
  ET951_RS16090 - 248701..249690 (+) 990 WP_154113968.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43809.09 Da        Isoelectric Point: 6.6084

>NTDB_id=343623 ET951_RS16075 WP_148555408.1 244385..245554(-) (cqsA) [Vibrio mimicus strain 2011V-1073]
MNRTHLPDFIQDKITHYIENYFDINKNGKHLVLGKQARSEDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTLGTVAPLTELVNLSKEFGCALLVDESHSLGTHGPNGAGLLAELNLTHEVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLDIIECADDKRQHLEKMAKKLRIGLTQLGMTIRSESQIIGL
ETGDERNTEKVRDFLENNGLFGSVFCRPATSKNKNIIRLSLNSDVTEKQITRIIEICTDAVKCSDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=343623 ET951_RS16075 WP_148555408.1 244385..245554(-) (cqsA) [Vibrio mimicus strain 2011V-1073]
ATGAATAGAACACATCTTCCTGATTTTATTCAGGATAAGATAACTCACTATATTGAAAATTATTTTGATATAAACAAAAA
CGGCAAACATCTAGTATTGGGAAAACAAGCTAGAAGTGAAGATATTATTTTGCAAAGTAATGATTATCTCGCACTGGCCA
ATCATCCTTTAATTAAAGCGCGTTTAGCAAAATCTTTGCTTGAGGAACAGCAGAGCTTATTTATGTCAGCCTCATTCTTA
CAAAATGATTATGACAAACCCATGATAGAGAAGCGCTTGGCCAAGTTCACAGGCTTTGATGAGTGTTTACTGTCTCAATC
CGGTTGGAATGCCAACGTAGGGTTGTTACAAACCATTTGTCAACCTAACACCAATGTCTACATCGACTTTTTCGCTCACA
TGTCATTGTGGGAAGGAGCACGCTATGCGAACGCTCAAGCCCACCCTTTTATGCACAATAACTGTGACCATTTACGTATG
CTCATCCAGCGTCATGGACCTGGAATCATAGTTGTGGATTCCATTTACAGCACTCTTGGCACTGTTGCGCCACTGACAGA
GCTAGTCAATCTCAGTAAGGAATTTGGCTGCGCTTTACTGGTTGATGAATCGCACTCTTTGGGCACGCACGGCCCTAACG
GTGCTGGTTTACTCGCTGAGTTGAACCTCACCCATGAAGTGCATTTCATGACCGCCAGCTTAGCCAAAACCTTTGCTTAT
CGAGCTGGAGCGATTTGGTGTAACAATGAGGTCAACCGTTGCGTGCCATTTATTAGCTATCCGGCGATTTTTAGTTCGAC
CTTACTTCCTTATGAAGCGGCTGGTTTAGAAACCACATTAGATATTATTGAATGTGCGGATGATAAACGGCAGCACTTAG
AAAAAATGGCCAAAAAACTGCGCATAGGGTTAACCCAATTAGGCATGACAATTCGTAGTGAAAGCCAAATTATTGGTTTA
GAAACGGGGGATGAGCGAAATACAGAAAAAGTCCGTGACTTTTTAGAAAACAATGGCTTATTTGGTTCTGTTTTTTGTCG
ACCTGCCACATCAAAAAACAAGAATATTATCCGCTTATCACTCAATAGTGATGTGACGGAAAAGCAAATAACTCGGATAA
TTGAAATATGCACTGATGCAGTAAAATGTTCGGATTTTTATTTTCGTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(42-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

91.003

100

0.91

Multiple sequence alignment