Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   ET951_RS09520 Genome accession   NZ_CP035682
Coordinates   2020575..2023922 (+) Length   1115 a.a.
NCBI ID   WP_192927844.1    Uniprot ID   -
Organism   Vibrio mimicus strain 2011V-1073     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2015575..2028922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS09495 sucC 2015718..2016884 (+) 1167 WP_001048577.1 ADP-forming succinate--CoA ligase subunit beta -
  ET951_RS09500 sucD 2016884..2017756 (+) 873 WP_000025475.1 succinate--CoA ligase subunit alpha -
  ET951_RS09505 znuB 2017844..2018626 (-) 783 WP_005519624.1 zinc ABC transporter permease subunit ZnuB -
  ET951_RS09510 znuC 2018619..2019407 (-) 789 WP_005522648.1 zinc ABC transporter ATP-binding protein ZnuC -
  ET951_RS09515 znuA 2019490..2020374 (+) 885 WP_154113339.1 zinc ABC transporter substrate-binding protein ZnuA -
  ET951_RS09520 tfoS 2020575..2023922 (+) 3348 WP_192927844.1 AraC family transcriptional regulator Regulator
  ET951_RS09525 - 2024458..2024688 (+) 231 WP_005510237.1 ferrous iron transport protein A -
  ET951_RS09530 feoB 2024685..2026961 (+) 2277 WP_154113341.1 Fe(2+) transporter permease subunit FeoB -
  ET951_RS09535 - 2026958..2027188 (+) 231 WP_000604052.1 FeoC-like transcriptional regulator -
  ET951_RS09540 - 2027250..2028635 (-) 1386 WP_154113342.1 IS4 family transposase -

Sequence

Protein


Download         Length: 1115 a.a.        Molecular weight: 126940.43 Da        Isoelectric Point: 7.6188

>NTDB_id=343610 ET951_RS09520 WP_192927844.1 2020575..2023922(+) (tfoS) [Vibrio mimicus strain 2011V-1073]
MLRTFLYGCLLNLIIPSLVLALDKSMSVFYPLPIQEQGRVIVAQNLYLGNDGGIWVHDVHGKVMYFDGQNILPRRGSVLP
QTSSHIVYANSAFWTFEQHELFRTYPGKPKELMISLTPGTQINQMGASNGMIWMTDSENFYSYEIRSGRMNSLSLHELYQ
LNSASTVVINDAQYMVSKWALATNVGVYLSEEHGFAHVKKSGKSYIQKLYFSHKRRELLVGSKHGAIVVDIENKRTLPEK
IGSSHVLSIAETEKEYWVGTEDGLYVYSIITGKVVQLESNNSGDYTLLGRKIYAMVNDFQGGMWIATDKGIFYYSLFGQQ
FTRYAAQTLSNDGNEAKLSKPKALDSAGNYLAITQQGLYNFNFSDELRKHLIYPGEINDFVISGDNVWIATKKGLIRYNL
NRRSVDTPQLPLSLLQTEVDHLTMDRNGNLWGSSSHQIWSFSPKDQTYTDYGSEWMVKKFSPSRITLLAAVEKGIVIGTE
HGAYSLFGKQIRFDFASHRYGEIIQAVEDADRHIWVVGSYGVFRWRKDQYEATPVELIEENIQPLCIAESKQGMWLVSSK
GISYYHFQGQLNKHFGAPYGLVSNEFLSSSCAVGGEQGSSSLIIGSQLGVVKANTEELAVSNVPNIQVMFSQVSVNHSTK
LLGYRMPEPLKIAYGDAISFQFGALPSSRNQSLEYKLNDDPHWQRFDWALLNFDQLLPGKYRLRVRSANPTQRYRTETLF
DFEVLQPWYMTPMAIVGYVVSLFSVLALAFWWRTRMMVKVNRKLKAQVDLKTSQLRHQSKIVLSNNHQLRKQLQLHHNIL
GKVLEGVDPLLRHLSSYAKVRGWYEFDVPFSKVKQELGQLHFMHRGDVEESKYHDLHLLIESALKSWQEEYSKAAIQLTY
SGETRFIEVRQFNLDVLFNAVLTDAIKRLYKHQELNIRLDIRDAHAVVVFSDYGAPIENIESVQVNLTGYGTYPLQELVT
RSGGELRVFALQERNIVELAWPLTTLAELEPFKSDESEPDVKPSIDAVDKEWLSKIEKLIEQNYSDPNFTTSSAAKSLFV
SERSLQRRFKAVTGKTFKESLNEVRLEKACQSLLAGAKIAQAAFDCGFNDPSYFSQRFKHHFGLSPSQFIEDREA

Nucleotide


Download         Length: 3348 bp        

>NTDB_id=343610 ET951_RS09520 WP_192927844.1 2020575..2023922(+) (tfoS) [Vibrio mimicus strain 2011V-1073]
GTGTTGCGCACATTTTTATACGGCTGCTTGCTGAACCTCATTATTCCTTCACTGGTATTGGCGCTGGATAAGTCAATGTC
GGTATTTTATCCCTTGCCTATTCAAGAGCAGGGGAGAGTCATTGTCGCTCAAAATCTCTATCTTGGTAACGATGGAGGAA
TTTGGGTTCATGATGTCCATGGCAAGGTCATGTATTTTGATGGACAAAATATCCTGCCGCGACGTGGCTCGGTTCTACCT
CAAACCTCTAGCCATATTGTTTATGCGAATAGTGCTTTCTGGACTTTCGAGCAGCATGAACTGTTTAGGACCTATCCCGG
TAAACCCAAAGAGCTGATGATAAGCCTCACACCCGGTACCCAAATCAACCAGATGGGGGCATCCAATGGCATGATTTGGA
TGACGGATAGTGAAAATTTTTATAGTTATGAGATTCGCAGTGGGCGAATGAACTCTCTATCACTGCATGAGCTTTATCAG
CTCAATAGTGCGAGTACCGTGGTGATTAATGATGCTCAATACATGGTTTCCAAATGGGCTTTGGCAACGAATGTTGGCGT
CTATTTATCTGAAGAGCACGGATTTGCACACGTTAAAAAATCAGGAAAGAGCTATATTCAAAAGCTGTATTTCTCACACA
AACGCCGAGAGTTGTTAGTAGGTTCAAAGCATGGCGCTATTGTTGTCGATATTGAAAATAAGCGTACGTTGCCCGAGAAA
ATTGGCTCCTCTCATGTATTATCCATTGCGGAAACAGAAAAAGAGTACTGGGTTGGTACGGAAGACGGACTGTATGTTTA
CTCAATTATCACGGGTAAGGTGGTTCAGTTAGAGAGTAATAACAGCGGTGATTACACCTTATTGGGTAGAAAAATCTACG
CCATGGTGAACGATTTTCAAGGTGGTATGTGGATAGCAACAGATAAAGGGATCTTTTATTACTCATTATTTGGGCAACAA
TTCACCCGTTATGCCGCTCAGACTCTTTCAAATGATGGTAATGAAGCGAAGCTCAGTAAACCTAAGGCTCTGGATTCGGC
TGGTAACTATTTAGCCATAACACAGCAGGGTCTCTATAACTTCAATTTTTCCGATGAGTTGCGTAAACATCTGATTTATC
CCGGTGAGATTAATGACTTTGTCATATCGGGAGATAATGTTTGGATTGCGACAAAGAAAGGTTTAATTCGATATAACCTA
AACCGCCGCAGTGTTGATACTCCGCAGTTGCCTCTCTCATTACTGCAAACGGAAGTCGATCACCTAACCATGGATAGGAA
TGGGAACCTGTGGGGATCGAGCAGTCATCAGATCTGGTCATTCTCACCTAAGGATCAAACCTATACGGATTATGGTTCAG
AGTGGATGGTTAAGAAGTTTTCGCCTTCGCGAATCACTCTACTTGCTGCTGTGGAAAAAGGCATTGTGATTGGCACAGAA
CATGGTGCTTATTCCTTGTTCGGTAAACAGATTCGCTTTGATTTTGCTAGTCACCGTTATGGTGAAATTATCCAAGCGGT
AGAAGATGCGGATCGACACATCTGGGTGGTTGGATCGTATGGCGTTTTTCGTTGGCGTAAAGATCAATACGAGGCGACTC
CAGTAGAACTCATCGAGGAGAATATTCAACCTCTGTGCATTGCTGAATCAAAGCAAGGCATGTGGCTTGTCTCTTCTAAA
GGCATCAGTTATTACCACTTTCAAGGCCAATTGAACAAACACTTTGGTGCTCCTTATGGCTTGGTCAGTAATGAATTTTT
ATCTTCATCTTGTGCTGTAGGTGGTGAACAAGGCTCTTCCTCACTCATCATAGGTTCACAGCTCGGGGTTGTTAAAGCGA
ATACTGAGGAATTAGCGGTTTCTAATGTGCCGAATATTCAGGTGATGTTTAGCCAAGTAAGCGTTAACCACAGCACCAAG
TTGCTGGGTTATCGCATGCCGGAACCGCTGAAAATTGCTTATGGTGATGCGATTAGCTTCCAGTTTGGAGCTTTGCCTTC
TTCGAGAAATCAGTCTTTAGAATACAAGCTTAATGATGATCCACATTGGCAGCGTTTTGATTGGGCATTACTGAACTTTG
ACCAACTCTTACCCGGAAAATATCGTTTGAGAGTACGCAGTGCAAACCCAACTCAACGATACCGTACTGAAACATTATTT
GATTTTGAAGTTTTGCAGCCTTGGTATATGACCCCGATGGCCATCGTTGGTTATGTTGTGAGTCTTTTTAGCGTATTGGC
TCTGGCTTTTTGGTGGCGTACGAGAATGATGGTGAAGGTTAACCGGAAATTAAAAGCACAGGTTGATCTAAAAACCAGTC
AATTACGCCATCAGAGCAAGATTGTATTGAGTAATAACCATCAACTCCGTAAGCAACTCCAACTACACCACAACATCCTT
GGTAAAGTTCTGGAAGGGGTTGACCCTTTACTGCGTCACTTATCCTCTTATGCGAAAGTTCGTGGATGGTATGAGTTTGA
TGTTCCTTTTAGTAAAGTGAAGCAGGAACTCGGCCAACTTCATTTTATGCACCGTGGTGATGTTGAAGAAAGCAAATATC
ACGATTTGCATCTATTGATCGAATCAGCATTAAAGAGTTGGCAGGAAGAATATAGCAAAGCCGCAATTCAACTGACTTAT
AGTGGTGAAACTCGGTTTATTGAAGTCCGTCAATTTAATCTTGACGTCTTGTTCAATGCCGTATTAACCGATGCCATAAA
GCGGCTGTATAAACACCAAGAGTTGAATATACGCCTTGATATTAGGGATGCTCATGCTGTTGTCGTATTTTCTGATTATG
GAGCACCGATAGAAAACATCGAATCGGTTCAAGTGAACTTGACTGGTTATGGAACCTATCCGCTGCAAGAGTTAGTAACT
CGAAGTGGAGGAGAGTTGAGAGTCTTTGCACTGCAAGAGCGTAATATTGTCGAGCTTGCCTGGCCGTTAACGACTCTTGC
TGAACTTGAGCCATTTAAGTCAGATGAAAGCGAACCAGATGTAAAACCGAGCATTGATGCCGTAGATAAAGAGTGGTTAA
GTAAGATCGAGAAATTGATTGAACAGAACTACAGTGACCCTAATTTCACCACTTCAAGCGCCGCAAAATCCCTGTTTGTG
TCGGAGCGAAGTTTGCAACGCCGCTTTAAAGCGGTAACTGGTAAAACCTTTAAAGAATCTCTTAATGAAGTCAGATTAGA
AAAGGCATGTCAGAGTTTATTGGCTGGTGCCAAAATTGCTCAAGCTGCCTTTGACTGTGGATTTAATGACCCATCCTATT
TCAGTCAGCGCTTCAAACACCATTTCGGATTATCACCAAGTCAATTCATCGAAGACCGAGAAGCCTAG

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1035-1110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

80.628

100

0.806

Multiple sequence alignment