Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   ET951_RS02750 Genome accession   NZ_CP035682
Coordinates   621724..622335 (+) Length   203 a.a.
NCBI ID   WP_154112909.1    Uniprot ID   -
Organism   Vibrio mimicus strain 2011V-1073     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 616724..627335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS02730 - 617226..618143 (-) 918 WP_000271060.1 ABC transporter ATP-binding protein -
  ET951_RS02735 - 618334..619986 (-) 1653 WP_000484920.1 SulP family inorganic anion transporter -
  ET951_RS02740 can 620135..620803 (+) 669 WP_001114113.1 carbonate dehydratase -
  ET951_RS02745 hpt 620897..621430 (-) 534 WP_000683346.1 hypoxanthine phosphoribosyltransferase -
  ET951_RS02750 hapR 621724..622335 (+) 612 WP_154112909.1 quorum-sensing master transcriptional regulator HapR Regulator
  ET951_RS02755 rsmI 622451..623317 (-) 867 WP_000131534.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ET951_RS02760 - 623387..625192 (+) 1806 WP_154113757.1 penicillin-binding protein activator -
  ET951_RS02765 - 625179..625547 (+) 369 WP_134809838.1 YraN family protein -
  ET951_RS02770 - 625551..626141 (+) 591 WP_000887295.1 phosphoheptose isomerase -
  ET951_RS02775 - 626144..626713 (+) 570 WP_000836324.1 BON domain-containing protein -
  ET951_RS02780 sspB 626782..627255 (-) 474 WP_000351078.1 ClpXP protease specificity-enhancing factor -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23649.30 Da        Isoelectric Point: 6.3371

>NTDB_id=343583 ET951_RS02750 WP_154112909.1 621724..622335(+) (hapR) [Vibrio mimicus strain 2011V-1073]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFATRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLEAKSNLQTLCKEMVKLAMTDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIKNMFIKAMERSELCEKHDV
DNMASLFHGIFYSIFLQVNRLGEQEAVYKLVDSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=343583 ET951_RS02750 WP_154112909.1 621724..622335(+) (hapR) [Vibrio mimicus strain 2011V-1073]
ATGGACGCATCAATCGAAAAACGCCCTCGGACACGGCTATCTCCACAAAAACGTAAACTACAACTGATGGAAATCGCATT
AGAAGTGTTTGCAACTCGCGGTATTGGCCGCGGCGGTCATGCCGACATCGCTGAAATTGCGCAAGTTTCAGTGGCGACAG
TATTTAACTATTTCCCAACTCGTGAAGATCTGGTCGACGACGTACTGAACTTTGTGGTTCGTCAGTATTCCAACTTCCTT
ACTGATCACATCGATCTAGATTTAGAAGCTAAAAGCAATCTACAAACACTGTGCAAAGAAATGGTGAAACTCGCCATGAC
TGACTGCCATTGGCTAAAAGTATGGTTTGAATGGAGTGCTTCGACTCGTGATGAAGTTTGGCCGTTGTTTGTTTCGACCA
ACCGCACCAACCAGTTACTGATCAAAAACATGTTCATCAAAGCGATGGAGCGTAGTGAATTGTGTGAGAAACACGATGTA
GACAATATGGCGAGCCTGTTCCACGGCATCTTCTACTCTATCTTCCTACAAGTAAATCGCTTGGGCGAACAGGAAGCAGT
GTATAAGTTAGTCGATAGCTATCTCAACATGCTGTGTATCTACAAGAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

96.059

100

0.961
  hapR Vibrio cholerae strain A1552

96.059

100

0.961
  opaR Vibrio parahaemolyticus RIMD 2210633

73.232

97.537

0.714

Multiple sequence alignment