Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ET951_RS00600 Genome accession   NZ_CP035682
Coordinates   123727..125097 (-) Length   456 a.a.
NCBI ID   WP_005515571.1    Uniprot ID   -
Organism   Vibrio mimicus strain 2011V-1073     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 118727..130097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS00565 moaE 119436..119900 (-) 465 WP_000370420.1 molybdopterin synthase catalytic subunit MoaE -
  ET951_RS00570 moaD 119902..120147 (-) 246 WP_000598593.1 molybdopterin synthase sulfur carrier subunit -
  ET951_RS00575 moaC 120144..120623 (-) 480 WP_192927801.1 cyclic pyranopterin monophosphate synthase MoaC -
  ET951_RS00580 moaB 120634..121146 (-) 513 WP_154112747.1 molybdenum cofactor biosynthesis protein B -
  ET951_RS00585 moaA 121207..122196 (-) 990 WP_192927800.1 GTP 3',8-cyclase MoaA -
  ET951_RS00590 - 122503..123399 (+) 897 WP_000061078.1 YvcK family protein -
  ET951_RS00595 luxU 123382..123723 (-) 342 WP_001209533.1 quorum-sensing phosphorelay protein LuxU -
  ET951_RS00600 luxO 123727..125097 (-) 1371 WP_005515571.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ET951_RS00605 uvrB 125405..127435 (-) 2031 WP_154112749.1 excinuclease ABC subunit UvrB -
  ET951_RS00615 - 128233..129069 (-) 837 WP_148534478.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50935.26 Da        Isoelectric Point: 5.7411

>NTDB_id=343579 ET951_RS00600 WP_005515571.1 123727..125097(-) (luxO) [Vibrio mimicus strain 2011V-1073]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLHAVKQKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFIRLSAEVVERFRHYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMPEPVNRALPLANENKVVSVH
EIFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQAWNEKVKEKEKER

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=343579 ET951_RS00600 WP_005515571.1 123727..125097(-) (luxO) [Vibrio mimicus strain 2011V-1073]
ATGGTAGAAGATACGGCGTCGGTTGCGGCTCTGTATCGTTCTTACCTCACTCCACTGGATATTGATATCAATATCGTCGG
AACTGGACGCGATGCCATTGAAAGTATTGGCCGCCGCGAACCTGATTTGATCCTGCTTGATCTACGTTTGCCTGATATGA
CGGGTATGGACGTGTTACACGCAGTAAAACAAAAATCGCCCGATGTTCCCATCGTATTTATGACCGCACATGGCTCGATT
GATACAGCGGTTGAAGCGATGCGCCACGGTGCTCAAGACTTTTTGATTAAGCCTTGTGAAGCGGATCGTCTACGCGTAAC
AGTGAATAACGCGATTCGTAAAGCGTCGAAACTCAAAAACGACGTTGATAATAAAAATCAAAATTACCAAGGCTTTATCG
GCAGCAGCCAAACCATGCAAGCCGTATATCGCACTATCGATTCTGCGGCGAGCAGTAAAGCCAGTATCTTCATTACCGGC
GAAAGTGGTACAGGTAAAGAGGTGTGTGCCGAAGCGATTCATGCTGCGAGTAAACGAGGCGATAAACCGTTTATTGCAAT
TAACTGTGCAGCCATTCCTAAAGATCTGATCGAAAGTGAGCTATTTGGCCACGTAAAAGGGGCTTTTACGGGAGCGGCGA
CTGAACGCCAAGGGGCTGCTGAAGCTGCTGATGGTGGCACACTGTTTTTGGATGAGCTTTGCGAAATGGATTTGGATTTA
CAGACCAAACTACTGCGCTTCATCCAAACAGGGACTTTCCAAAAGGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
CTTTGTTTGTGCAACCAACCGCGACCCATGGAAAGAAGTGCAAGAAGGCCGTTTTCGTGAAGACTTGTATTACCGTTTGT
ATGTGATCCCTCTGCATTTACCGCCATTGCGCGCGCGCGGTGATGATGTGATTGAAATTGCCTATTCGCTGCTTGGCTTC
ATGTCCAAAGAGGAAGGCAAGGACTTCATACGTTTGTCGGCGGAAGTGGTAGAACGCTTCCGTCACTATGAGTGGCCGGG
TAACGTGCGCCAACTGCAAAACGTATTGCGTAACGTTGTGGTGTTGAATGAAGGGCGTGAAATTACTTTGGATATGTTGC
CACCGCCGCTTAACCAAATGCCAGAGCCAGTTAATCGAGCGTTGCCTCTCGCGAATGAAAATAAAGTCGTGTCGGTGCAT
GAAATTTTCCCGTTGTGGATGACGGAAAAGCAAGCCATAGAACAAGCTATTGAAGCTTGTGATGGCAATATTCCTCGTGC
GGCAACGTATTTGGATGTCAGCCCATCGACGATTTACCGCAAGCTTCAAGCTTGGAATGAGAAAGTCAAAGAAAAAGAGA
AGGAGCGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

97.807

100

0.978
  pilR Pseudomonas aeruginosa PAK

38.106

99.561

0.379

Multiple sequence alignment