Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   F1716_RS07290 Genome accession   NZ_CP045048
Coordinates   1323714..1324379 (-) Length   221 a.a.
NCBI ID   WP_002884392.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain NADC 20827     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1318714..1329379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1716_RS07275 (F1716_07330) groES 1320570..1320830 (+) 261 WP_002825273.1 co-chaperone GroES -
  F1716_RS07280 (F1716_07335) groL 1320851..1322488 (+) 1638 WP_002860445.1 chaperonin GroEL -
  F1716_RS07285 (F1716_07340) dccS 1322531..1323721 (-) 1191 WP_032586718.1 two-component system sensor histidine kinase DccS -
  F1716_RS07290 (F1716_07345) ciaR 1323714..1324379 (-) 666 WP_002884392.1 two-component system response regulator DccR Regulator
  F1716_RS07295 (F1716_07350) - 1324527..1325126 (+) 600 WP_002859294.1 bacteriohemerythrin -
  F1716_RS07300 (F1716_07355) - 1325137..1325385 (+) 249 WP_002853192.1 ribbon-helix-helix domain-containing protein -
  F1716_RS07310 (F1716_07365) - 1325644..1326891 (-) 1248 WP_002853241.1 ArsS family sensor histidine kinase -
  F1716_RS07315 (F1716_07370) - 1326888..1327562 (-) 675 WP_002853196.1 response regulator transcription factor -
  F1716_RS07320 (F1716_07375) htrA 1327638..1329056 (-) 1419 WP_002860448.1 serine protease HtrA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25569.28 Da        Isoelectric Point: 4.6834

>NTDB_id=343577 F1716_RS07290 WP_002884392.1 1323714..1324379(-) (ciaR) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFM
TSLNTTNDLKQGFDAGCDDYIKKPFELAELSIRVKALLKRAFSHKNEDFEDLGDGLRFEFTTQILYHNNKALALPSKEIK
LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGYCYG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=343577 F1716_RS07290 WP_002884392.1 1323714..1324379(-) (ciaR) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
ATGGCTGCTAAAATTTTACTTTTAGAAGATGATTTGAGCTTGAGTGAGATCATTGAAGAGTTTTTAAACGATGAGGGATA
TGAAGTATTTTTATGCGATAATGCGCAAGAAGCTTTAGATATGGCTTATGAAAGATATTTTGATCTTTGGATTTTAGATG
TAAAAGTTCCTTTAGGAGATGGATTTTCATTACTTAAAGAATTAAGAAAAAGCGGAAAGCAAACTCCAGCAATTTTCATG
ACTTCTTTAAACACAACAAACGATTTAAAACAAGGCTTTGACGCAGGTTGTGATGATTATATAAAAAAACCTTTTGAACT
TGCCGAGTTATCTATCAGGGTTAAAGCTTTGCTTAAAAGAGCTTTTTCACATAAAAATGAAGATTTTGAAGATTTAGGGG
ATGGACTTAGGTTCGAATTTACTACACAAATTCTTTATCATAATAATAAAGCTTTGGCTTTGCCGAGTAAAGAGATTAAA
CTTTTGTCTTTATTACTTAAAAATAAAAACAACTTTTTAAGTACAGAGAGAATTTTTGAAGAACTCTGGGATTATGATGA
GGAGCCTAGTGAGCTAAGTTTAAGGGCTTATGTGAAAAATTTACGTAAAATTTTAGGAAAAGAAAAAATTATAAATCAAA
GAGGCAGGGGATATTGCTATGGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae D39

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae R6

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae TIGR4

36.364

99.548

0.362