Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   EWA66_RS16280 Genome accession   NZ_CP035681
Coordinates   349965..351143 (-) Length   392 a.a.
NCBI ID   WP_039444792.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 08-2462     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 344965..356143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA66_RS16265 - 345781..346905 (-) 1125 WP_229599928.1 fatty acid desaturase -
  EWA66_RS16270 - 347072..347619 (+) 548 Protein_319 GNAT family N-acetyltransferase -
  EWA66_RS16275 cqsS 347881..349926 (+) 2046 WP_039444795.1 response regulator Regulator
  EWA66_RS16280 cqsA 349965..351143 (-) 1179 WP_039444792.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  EWA66_RS16285 ylqF 351417..352361 (-) 945 WP_039444790.1 ribosome biogenesis GTPase YlqF -
  EWA66_RS16290 - 352696..353652 (+) 957 WP_039444787.1 AEC family transporter -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 43614.82 Da        Isoelectric Point: 6.3654

>NTDB_id=343576 EWA66_RS16280 WP_039444792.1 349965..351143(-) (cqsA) [Vibrio navarrensis strain 08-2462]
MNNMFPKQLPEFISNRLLFQVEDLIHSNKSKTHLVMGKVPESDSIIMQSNDYLSIANHPEIKQVHTDAINKCDASVVMSA
IFLQSERSKPNFEKQLASYTGMSSCLLSQSGWAANIGLLQTICAPTTPVYIDFFTHMSLWEGARIADAAIHPFMHNNLNH
LIKQVERYGAGIIIVDSVYSTIGTVAPLKELCDIAERYGCAIIVDESHSLGTHGPQGAGLVKELELTDKVDFITVSLAKS
FAYRAGAILGHDLISQTLPFVAYPAIFSSALLPYEIDRLEKTLEIVRGSDEKRAQVERLARQLRQGLKQIGFQVRSQSQI
VAIETADERNTEHVRDYLEDNGIFGSVFCRPATGKNKNIIRFSINASLSEQDIDKTIEVCRSAYQSGQFVFV

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=343576 EWA66_RS16280 WP_039444792.1 349965..351143(-) (cqsA) [Vibrio navarrensis strain 08-2462]
ATGAATAACATGTTTCCTAAACAACTACCTGAATTTATATCAAATCGCTTATTATTTCAGGTAGAAGACCTGATTCATAG
TAATAAGAGCAAAACACATTTAGTCATGGGAAAAGTCCCAGAAAGTGACTCAATTATCATGCAGAGCAATGATTATTTAT
CAATTGCTAATCATCCTGAAATCAAACAGGTTCATACTGATGCAATAAATAAATGCGATGCCAGTGTTGTCATGTCGGCT
ATTTTTTTACAAAGCGAAAGGAGCAAACCCAATTTTGAAAAGCAGCTCGCCAGCTATACTGGAATGTCATCTTGTCTGCT
GTCTCAATCCGGCTGGGCAGCCAATATTGGTCTTTTGCAAACGATCTGCGCCCCTACAACCCCGGTCTACATTGACTTTT
TTACCCATATGTCACTTTGGGAGGGAGCGCGTATCGCAGATGCGGCCATCCATCCTTTTATGCATAACAACCTCAATCAC
CTGATTAAGCAGGTAGAACGATACGGCGCTGGGATCATCATTGTGGACTCTGTCTACAGCACAATTGGCACCGTCGCACC
ACTCAAGGAGCTGTGTGACATCGCCGAAAGATATGGATGCGCCATTATCGTCGATGAGTCTCACTCGTTGGGGACACACG
GCCCACAGGGCGCGGGATTGGTCAAAGAGCTAGAACTGACCGATAAAGTTGACTTTATTACTGTCAGCCTAGCCAAGTCG
TTTGCTTATCGGGCCGGGGCGATTCTTGGCCACGATCTCATTTCACAAACTCTGCCGTTTGTTGCCTACCCGGCGATATT
TAGCTCTGCTTTGCTGCCATATGAAATCGACAGATTAGAGAAAACACTGGAGATTGTTCGAGGAAGTGATGAAAAAAGAG
CCCAAGTCGAACGCTTGGCAAGACAACTTCGTCAAGGACTCAAGCAGATCGGATTTCAGGTTCGCAGCCAATCTCAAATT
GTCGCCATTGAAACGGCCGATGAACGGAACACTGAGCATGTGCGAGACTATTTAGAAGATAACGGCATTTTTGGCTCAGT
ATTTTGTCGTCCAGCGACGGGAAAGAATAAGAATATCATCCGATTCTCTATTAATGCATCACTTAGCGAACAAGATATAG
ATAAAACAATCGAAGTATGCCGCTCGGCTTATCAATCTGGACAATTTGTATTTGTTTAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.763

98.98

0.582

Multiple sequence alignment