Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   EWA66_RS16275 Genome accession   NZ_CP035681
Coordinates   347881..349926 (+) Length   681 a.a.
NCBI ID   WP_039444795.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 08-2462     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 342881..354926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA66_RS16255 - 342898..343905 (+) 1008 WP_039444804.1 substrate-binding domain-containing protein -
  EWA66_RS16260 - 344743..345720 (+) 978 WP_039444816.1 chemotaxis protein -
  EWA66_RS16265 - 345781..346905 (-) 1125 WP_229599928.1 fatty acid desaturase -
  EWA66_RS16270 - 347072..347619 (+) 548 Protein_319 GNAT family N-acetyltransferase -
  EWA66_RS16275 cqsS 347881..349926 (+) 2046 WP_039444795.1 response regulator Regulator
  EWA66_RS16280 cqsA 349965..351143 (-) 1179 WP_039444792.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  EWA66_RS16285 ylqF 351417..352361 (-) 945 WP_039444790.1 ribosome biogenesis GTPase YlqF -
  EWA66_RS16290 - 352696..353652 (+) 957 WP_039444787.1 AEC family transporter -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78356.86 Da        Isoelectric Point: 6.8421

>NTDB_id=343575 EWA66_RS16275 WP_039444795.1 347881..349926(+) (cqsS) [Vibrio navarrensis strain 08-2462]
MESIRKVYQYANPNLTLVGWMGFLGFPTYYWVWTHLFPQSYENLPLRLLCSALFLLLVLRERLPMPIRTRMPIVYLIVIT
TCLPFFFFFMLLMNEWSNVWVMSFMAAIFLHILLVHMTKVMFSQTFIGVGMAVLAAYVCNDFHLVISVDWRHVPIFLFIY
LFGNLFYFRNQVEHESRISIAKAFGAGIAHEMRNPLSGLVASIDVIQSVLPNDKVEKRSSYALSAKDVALLREVSEEAMK
IIHSGNETIDLLLTSIDENRVSRSTFKRHSANEVVKNAIESFSYKKAADRQCIRYHEEGQFEFFGSHTLLKYVIYNLVKN
AFNYRNPEVFTIDITISRDETENLITVRDNGQGIAPASMEHIFKDFYTTGKSSNYGLGLPFCKKVMRSFGGAISCQSEQG
QWTEFTLTFPLVKSKVVGEIKYELMKLKSVFFISEQEILCKKMAESARSSGFALTVKTAEQACLMAEHEFEYDLIFLDLS
SVDLKNSQLDRLESLLHFTEARIVYLYQDAIVNRRNQSTLPVLWVETQSWLLNTAQIIDRLMFDANFDAYMPAPVRKSDD
SKRVIMVVDDNDSLRKFTSLLLEKQGFEVIQREDGREALHALEKHHVDLILMDIEMPILDGIEASIQIRQSNKKYAHIPI
IAHTGDSTPVTLERINQSGMSDYLVKPADKSKLLDKISHWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=343575 EWA66_RS16275 WP_039444795.1 347881..349926(+) (cqsS) [Vibrio navarrensis strain 08-2462]
ATGGAATCGATTCGCAAGGTTTATCAATACGCTAACCCTAACTTGACGCTTGTCGGCTGGATGGGGTTTCTCGGCTTTCC
GACCTACTACTGGGTTTGGACGCATCTTTTTCCTCAGTCTTACGAGAATCTTCCGCTCAGGCTACTTTGTTCAGCTTTAT
TCTTGCTGCTGGTTTTGCGAGAGCGGTTACCCATGCCGATCCGCACGCGTATGCCCATCGTCTATTTGATAGTGATAACA
ACCTGTTTGCCTTTTTTCTTCTTTTTTATGCTGTTGATGAATGAATGGTCTAACGTTTGGGTCATGTCTTTTATGGCGGC
GATTTTCTTACACATCCTGTTAGTCCATATGACTAAGGTGATGTTTAGTCAAACATTTATCGGCGTTGGCATGGCGGTGC
TTGCGGCGTATGTGTGCAATGACTTCCATCTGGTGATTTCCGTCGACTGGCGTCATGTGCCGATATTTCTCTTTATCTAT
CTGTTTGGCAACTTATTCTATTTTCGCAATCAAGTTGAACATGAATCACGGATTTCGATCGCCAAAGCGTTTGGTGCAGG
AATCGCCCATGAAATGCGCAATCCGTTGAGCGGCTTGGTTGCTTCTATCGATGTGATCCAATCAGTGCTGCCCAACGATA
AAGTTGAGAAACGCAGCAGCTACGCGTTAAGTGCCAAAGACGTCGCTTTACTACGAGAAGTGAGTGAAGAAGCAATGAAG
ATTATCCATTCGGGCAATGAGACGATTGATCTGCTTTTAACCTCGATTGATGAAAATCGTGTCTCTCGCTCAACCTTTAA
GCGGCATTCGGCTAATGAGGTCGTAAAAAACGCCATTGAGAGCTTTAGCTATAAAAAAGCGGCAGACAGGCAGTGCATTC
GTTACCACGAAGAAGGGCAGTTTGAATTTTTTGGCAGCCACACGTTACTGAAGTACGTTATCTATAACCTTGTTAAAAAT
GCGTTTAACTATCGTAATCCCGAGGTATTCACCATTGATATTACGATAAGCCGCGATGAAACAGAGAATCTGATCACCGT
ACGAGACAACGGTCAGGGAATTGCGCCAGCCTCAATGGAACATATCTTTAAGGACTTCTATACCACAGGGAAAAGCAGTA
ACTATGGTTTAGGATTGCCATTTTGTAAAAAGGTGATGCGATCCTTTGGCGGTGCTATCTCTTGTCAATCTGAGCAAGGG
CAATGGACGGAGTTTACGCTGACGTTTCCGTTGGTAAAATCTAAAGTAGTTGGTGAAATAAAATATGAGCTGATGAAACT
CAAGTCGGTCTTTTTTATCAGTGAGCAAGAGATTCTGTGTAAAAAAATGGCGGAATCAGCTCGCTCAAGTGGTTTCGCTC
TCACGGTAAAAACGGCCGAGCAAGCGTGCTTAATGGCCGAACATGAGTTTGAATATGATCTTATCTTTCTGGATTTGAGT
TCGGTCGACTTAAAAAACAGCCAGCTAGACAGGCTAGAATCTTTATTGCATTTTACCGAAGCGCGCATTGTCTACTTGTA
CCAAGATGCGATAGTCAATCGCCGCAACCAAAGTACATTGCCGGTATTGTGGGTGGAAACGCAATCTTGGTTACTCAATA
CAGCACAGATTATTGACAGACTCATGTTTGACGCGAACTTTGATGCGTACATGCCCGCTCCGGTAAGAAAATCCGACGAT
AGTAAACGGGTGATTATGGTGGTTGACGATAATGATTCACTGCGCAAATTCACCTCTTTATTATTGGAGAAACAGGGTTT
CGAAGTGATTCAAAGAGAAGATGGTCGGGAAGCGCTTCATGCGTTGGAAAAACATCATGTTGATCTCATTTTGATGGATA
TTGAAATGCCGATATTAGATGGTATAGAAGCGTCAATTCAGATCCGTCAGTCAAATAAAAAATATGCTCATATTCCAATT
ATCGCCCATACAGGTGACAGTACTCCTGTAACGCTTGAGAGAATTAATCAGTCAGGTATGTCTGATTACTTGGTCAAACC
CGCCGATAAAAGTAAGTTGTTAGATAAAATATCTCATTGGATATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-411)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.561

100

0.498

Multiple sequence alignment