Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   F1716_RS07205 Genome accession   NZ_CP045048
Coordinates   1306825..1307691 (-) Length   288 a.a.
NCBI ID   WP_002852840.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain NADC 20827     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1301825..1312691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1716_RS07185 (F1716_07240) metF 1303678..1304526 (+) 849 WP_032583796.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  F1716_RS07190 (F1716_07245) - 1304548..1304739 (-) 192 WP_032583798.1 hypothetical protein -
  F1716_RS07195 (F1716_07250) atpB 1304736..1305416 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  F1716_RS07200 (F1716_07255) radA 1305485..1306825 (-) 1341 WP_002852872.1 DNA repair protein RadA Machinery gene
  F1716_RS07205 (F1716_07260) pilA 1306825..1307691 (-) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  F1716_RS07210 (F1716_07265) - 1307691..1308248 (-) 558 WP_002852864.1 TlpA disulfide reductase family protein -
  F1716_RS07215 (F1716_07270) - 1308331..1308957 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  F1716_RS07220 (F1716_07275) rny 1308878..1310431 (+) 1554 WP_002852704.1 ribonuclease Y -
  F1716_RS07225 (F1716_07280) - 1310440..1310997 (+) 558 WP_002852823.1 DedA family protein -
  F1716_RS07230 (F1716_07285) - 1310997..1312256 (+) 1260 WP_002873165.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32036.03 Da        Isoelectric Point: 5.5179

>NTDB_id=343575 F1716_RS07205 WP_002852840.1 1306825..1307691(-) (pilA) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=343575 F1716_RS07205 WP_002852840.1 1306825..1307691(-) (pilA) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGGATTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAACTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAACAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.254

100

0.434

Multiple sequence alignment