Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   EWA66_RS15365 Genome accession   NZ_CP035681
Coordinates   147484..148581 (+) Length   365 a.a.
NCBI ID   WP_039445156.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 08-2462     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 142484..153581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA66_RS15335 - 142670..144010 (-) 1341 WP_039445165.1 MATE family efflux transporter -
  EWA66_RS15340 - 144179..144496 (-) 318 WP_039427122.1 DUF496 family protein -
  EWA66_RS15345 - 144769..144972 (+) 204 WP_039445163.1 hypothetical protein -
  EWA66_RS15350 - 145073..145732 (+) 660 WP_039445161.1 YceH family protein -
  EWA66_RS15355 - 145732..146028 (+) 297 WP_039445159.1 GIY-YIG nuclease family protein -
  EWA66_RS15360 - 146101..147261 (+) 1161 WP_039445158.1 conjugal transfer protein TraF -
  EWA66_RS15365 luxP 147484..148581 (+) 1098 WP_039445156.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  EWA66_RS15370 luxQ 148585..151152 (+) 2568 WP_039445154.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  EWA66_RS15375 - 151187..151849 (-) 663 WP_039445152.1 flagellar brake protein -
  EWA66_RS15380 - 151989..152927 (-) 939 WP_039445150.1 DMT family transporter -
  EWA66_RS15385 - 153068..153523 (+) 456 WP_039427136.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41410.01 Da        Isoelectric Point: 5.9984

>NTDB_id=343574 EWA66_RS15365 WP_039445156.1 147484..148581(+) (luxP) [Vibrio navarrensis strain 08-2462]
MKKALMMSLLCIANFSANAQTSEVLNGYWAYQEYLERFPEQADLTNALAQTVRNHPVPLKAYQAKPVRISVVFPGQQVSD
YWVRNLSAFEKRMDKLQISYQINQVFTRPNADIKQQSVSLMEALKSKSDYLIFTLDTTRHRKFIEHVLDSSDTKLILQNI
TTPVQAWEKRQPFLYVGFDHAQGSIALAKQLEKMYPQGGKYSVLYFSEGYVSDARGDTFIRELNRDNHFQLRSSFYTKAT
KESGYETAMMSLEKYPDVNFIYACSTDVALGALDALKELKRDDIVLNGWGGGSAELDAISAGDLDLTVMRMNDDTGIAMA
EAIKWDLEGKKVPTVFSGDFEVVTKEDSPQHIEALKERAFRYSGQ

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=343574 EWA66_RS15365 WP_039445156.1 147484..148581(+) (luxP) [Vibrio navarrensis strain 08-2462]
ATGAAAAAAGCATTAATGATGTCTTTGCTTTGTATAGCAAATTTTAGTGCTAATGCACAAACTTCAGAAGTATTGAACGG
GTATTGGGCGTATCAAGAATATTTAGAGCGTTTCCCAGAGCAAGCCGATTTAACTAACGCACTTGCGCAAACGGTACGTA
ACCATCCTGTGCCGCTCAAAGCGTATCAGGCAAAGCCTGTGCGTATTTCGGTGGTGTTTCCCGGCCAACAAGTTTCTGAT
TACTGGGTTAGGAATCTGAGTGCGTTTGAGAAACGCATGGATAAGCTACAGATAAGCTACCAGATCAATCAAGTGTTCAC
CCGTCCAAATGCCGATATTAAGCAGCAAAGCGTATCTCTGATGGAGGCGCTAAAGAGTAAGTCGGATTATCTGATTTTTA
CCCTAGACACCACCCGTCACCGCAAATTCATTGAGCATGTGCTTGACTCCTCGGACACTAAGCTGATCTTGCAAAACATT
ACTACACCAGTACAGGCTTGGGAAAAACGTCAGCCATTTTTGTATGTCGGTTTTGATCATGCGCAAGGCAGTATTGCGCT
GGCTAAGCAATTAGAAAAAATGTACCCACAGGGCGGCAAGTACTCAGTGCTCTATTTCTCAGAAGGTTATGTTAGTGATG
CCAGAGGCGATACATTTATTCGTGAGCTAAACAGAGACAACCATTTTCAATTGCGCTCGTCGTTCTACACCAAAGCGACC
AAAGAATCTGGCTATGAAACTGCGATGATGAGCTTAGAAAAGTATCCAGATGTCAACTTCATCTATGCCTGCTCGACCGA
TGTCGCCTTGGGCGCGCTTGATGCGTTAAAAGAGCTCAAACGAGACGACATTGTGCTCAACGGCTGGGGCGGCGGATCGG
CTGAGTTGGATGCCATCAGCGCTGGCGATCTCGACCTCACCGTCATGCGAATGAATGATGATACGGGTATTGCGATGGCA
GAAGCGATTAAGTGGGACTTGGAAGGAAAGAAAGTCCCGACCGTATTTTCAGGAGATTTTGAAGTGGTGACCAAAGAAGA
TAGCCCGCAACACATTGAAGCGCTTAAAGAGAGAGCCTTCAGATATTCTGGCCAATAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

65.014

99.452

0.647

Multiple sequence alignment