Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F1716_RS07200 Genome accession   NZ_CP045048
Coordinates   1305485..1306825 (-) Length   446 a.a.
NCBI ID   WP_002852872.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain NADC 20827     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1300485..1311825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1716_RS07175 (F1716_07230) - 1300622..1301392 (+) 771 WP_002855781.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  F1716_RS07180 (F1716_07235) metE 1301404..1303668 (+) 2265 WP_044277889.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  F1716_RS07185 (F1716_07240) metF 1303678..1304526 (+) 849 WP_032583796.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  F1716_RS07190 (F1716_07245) - 1304548..1304739 (-) 192 WP_032583798.1 hypothetical protein -
  F1716_RS07195 (F1716_07250) atpB 1304736..1305416 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  F1716_RS07200 (F1716_07255) radA 1305485..1306825 (-) 1341 WP_002852872.1 DNA repair protein RadA Machinery gene
  F1716_RS07205 (F1716_07260) pilA 1306825..1307691 (-) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  F1716_RS07210 (F1716_07265) - 1307691..1308248 (-) 558 WP_002852864.1 TlpA disulfide reductase family protein -
  F1716_RS07215 (F1716_07270) - 1308331..1308957 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  F1716_RS07220 (F1716_07275) rny 1308878..1310431 (+) 1554 WP_002852704.1 ribonuclease Y -
  F1716_RS07225 (F1716_07280) - 1310440..1310997 (+) 558 WP_002852823.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49054.94 Da        Isoelectric Point: 6.9288

>NTDB_id=343574 F1716_RS07200 WP_002852872.1 1305485..1306825(-) (radA) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIIDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTTKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=343574 F1716_RS07200 WP_002852872.1 1305485..1306825(-) (radA) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGTATGAAAA
CAAGTGAAGCTGTTTGTATTGAAGATGTGGAATTAGAACATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCCAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCTCAGATTAAAT
TAAGAGCTGATCGCCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTACACAAAAAGGATTATAGTATTCTTATCATTGATTCTATACAAACTCTATATTCAAATAAAGTCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTTGAACTTATGCGTGTTAGCAAGGCTTATAATATCAGTACTTTTATCATAG
GGCACATTACTAAAGAAGGTGCTATAGCAGGACCTAGGGTTCTTGAACATATGGTGGATGTGGTGCTTTATTTTGAAGGA
GATGCCACTAAAGAAATTAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTACTAAGGGTTTGATCAGTGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCTTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGGTATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAACTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTAGCTGTGGTTGCAGCTATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGTAAAGATAGTATTTTTATAGGAGAACTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCTATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGGCTTAAGTGTTTTGTTGCTAAAGAACTTTCACAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(71-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

45.861

100

0.46
  radA Streptococcus pneumoniae Rx1

45.861

100

0.46
  radA Streptococcus pneumoniae D39

45.861

100

0.46
  radA Streptococcus pneumoniae TIGR4

45.861

100

0.46
  radA Streptococcus mitis SK321

45.843

99.776

0.457
  radA Streptococcus mitis NCTC 12261

45.843

99.776

0.457
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.437

97.534

0.453

Multiple sequence alignment