Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   EWA66_RS06710 Genome accession   NZ_CP035680
Coordinates   1408421..1409035 (-) Length   204 a.a.
NCBI ID   WP_039430441.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 08-2462     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1403421..1414035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA66_RS06700 aceF 1404656..1406578 (+) 1923 WP_039439525.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  EWA66_RS06705 lpdA 1406834..1408261 (+) 1428 WP_039430442.1 dihydrolipoyl dehydrogenase -
  EWA66_RS06710 opaR 1408421..1409035 (-) 615 WP_039430441.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  EWA66_RS06715 hpt 1409427..1409957 (+) 531 WP_039430440.1 hypoxanthine phosphoribosyltransferase -
  EWA66_RS06720 can 1410079..1410747 (-) 669 WP_039439526.1 carbonate dehydratase -
  EWA66_RS06725 - 1410982..1412640 (+) 1659 WP_039439527.1 SulP family inorganic anion transporter -
  EWA66_RS06730 - 1412792..1413715 (+) 924 WP_039430437.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23492.92 Da        Isoelectric Point: 6.3361

>NTDB_id=343562 EWA66_RS06710 WP_039430441.1 1408421..1409035(-) (opaR) [Vibrio navarrensis strain 08-2462]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAQDNLKNITNAMIELVTQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFVRAIERGEVCDKHSPE
DLANMFLGICYSLFVQANRAKSEAELTKLVNSYLQMLCIYKGES

Nucleotide


Download         Length: 615 bp        

>NTDB_id=343562 EWA66_RS06710 WP_039430441.1 1408421..1409035(-) (opaR) [Vibrio navarrensis strain 08-2462]
ATGGACTCAATAGCAAAGAGACCTCGAACTCGTTTATCTCCACTGAAACGTAAACAACAACTGATGGAAATCGCACTGGA
AGTGTTTGCTCGTCGTGGCATCGGCCGCGGTGGTCACGCAGACATCGCCGAGATTGCACAAGTTTCTGTCGCCACCGTAT
TTAACTATTTTCCGACACGTGAAGATCTGGTTGATGAAGTGCTCAATCATGTCGTGCGTCAGTTTTCAAACTTCCTGTCC
GACAACATTGACCTCGACATTCACGCGCAAGATAACCTCAAAAACATCACCAACGCGATGATTGAACTGGTGACTCAAGA
CTGCCATTGGCTCAAAGTGTGGTTTGAATGGAGCGCTTCAACGCGTGATGAAGTATGGCCACTATTTGTCACCACCAACC
GCACTAACCAACTGCTGGTACAGAACATGTTTGTTCGCGCCATTGAGCGTGGCGAAGTGTGTGATAAACACAGCCCGGAA
GATCTGGCGAATATGTTCCTTGGCATCTGTTACTCGCTGTTTGTGCAAGCCAACCGCGCCAAGAGCGAAGCGGAACTGAC
CAAACTGGTCAACAGCTACCTACAAATGCTTTGTATCTATAAGGGTGAGAGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

88.67

99.51

0.882
  hapR Vibrio cholerae C6706

71.859

97.549

0.701
  hapR Vibrio cholerae strain A1552

71.859

97.549

0.701

Multiple sequence alignment