Detailed information NTG0343554

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EWA66_RS06485
• Genome accession: NZ_CP035680
• Coordinates: 1363878..1364876 (+)
• Length: 332 a.a.
• NCBI ID: WP_039439488.1
• Uniprot ID: -
• Organism: Vibrio navarrensis strain 08-2462
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1358878..1369876

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EWA66_RS06450	ftsB	1358906..1359187 (+)	282	WP_039430478.1	cell division protein FtsB	-
EWA66_RS06455	ispD	1359189..1359893 (+)	705	WP_039439485.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EWA66_RS06460	ispF	1359897..1360373 (+)	477	WP_039430476.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EWA66_RS06465	truD	1360408..1361454 (+)	1047	WP_039439497.1	tRNA pseudouridine(13) synthase TruD	-
EWA66_RS06470	surE	1361457..1362233 (+)	777	WP_039439498.1	5'/3'-nucleotidase SurE	-
EWA66_RS06475	-	1362226..1362852 (+)	627	WP_039439486.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EWA66_RS06480	-	1362868..1363791 (+)	924	WP_039439487.1	peptidoglycan DD-metalloendopeptidase family protein	-
EWA66_RS06485	rpoS	1363878..1364876 (+)	999	WP_039439488.1	RNA polymerase sigma factor RpoS	Regulator
EWA66_RS06490	mutS	1364974..1367535 (-)	2562	WP_039439489.1	DNA mismatch repair protein MutS	-
EWA66_RS06495	pncC	1367617..1368108 (+)	492	WP_039439490.1	nicotinamide-nucleotide amidase	-
EWA66_RS06500	recA	1368285..1369331 (+)	1047	WP_039439491.1	recombinase RecA	Machinery gene
EWA66_RS06505	recX	1369390..1369848 (+)	459	WP_039439492.1	recombination regulator RecX	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 38054.89 Da
• Isoelectric Point: 4.4064

>NTDB_id=343554 EWA66_RS06485 WP_039439488.1 1363878..1364876(+) (rpoS) [Vibrio navarrensis strain 08-2462]
MSNSNAVTKVDDFDIDQMDVELNDSDIEVSDKEDNSSDTNTALREEFDVSNKSLDATQLYLGEIGFSPLLTAEEEVLYAR
RALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQ
TRTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIASQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDA
NNSDPEVSTQDEDMRNSLIFWLEELNPKQKEVLARRFGLLGYEPSTLEEVGKEIGLTRERVRQIQVEGLRRLREILVKQG
LNMENLFDVDMD

Nucleotide

• Length: 999 bp

>NTDB_id=343554 EWA66_RS06485 WP_039439488.1 1363878..1364876(+) (rpoS) [Vibrio navarrensis strain 08-2462]
ATGAGTAACAGCAATGCAGTAACCAAAGTTGATGATTTCGATATTGATCAAATGGATGTAGAGTTGAACGACTCTGATAT
CGAAGTTAGCGATAAAGAAGACAACAGTTCCGATACCAATACCGCACTCAGAGAAGAGTTTGATGTCAGCAACAAAAGCT
TGGATGCGACTCAGCTTTACCTCGGAGAGATCGGTTTCTCACCTCTACTGACCGCAGAAGAAGAAGTACTTTACGCTCGA
CGCGCATTGCGTGGAGATGAAGCAGCACGTAAACGTATGATTGAAAGCAACTTACGTTTGGTTGTGAAGATTTCTCGCCG
CTACAGCAACCGTGGATTAGCGTTACTTGATCTGATTGAAGAGGGTAACCTCGGCCTGATCAGAGCGGTGGAAAAATTTG
ACCCAGAGCGCGGCTTCCGCTTCTCTACTTACGCCACTTGGTGGATTCGTCAAACCATCGAACGCGCACTGATGAATCAG
ACTCGGACCATCCGTTTACCTATCCATGTTGTCAAAGAGCTGAACATCTATCTGCGTACCGCGCGCGAGTTGTCGCAAAA
ACTCGACCACGAACCTACGGCAGAAGAGATCGCTTCTCAGCTGGATATCCCGGTTGAAGATGTCAGCAAAATGCTGCGCC
TCAATGAGCGGATTAGCTCTGTCGATACACCGATTGGTGGTGACGGGGAAAAAGCGCTGCTGGATATTATTCCCGATGCG
AACAACTCCGATCCTGAAGTGTCAACTCAGGATGAAGATATGCGCAACTCACTGATTTTCTGGTTGGAAGAGCTAAATCC
GAAACAGAAAGAAGTGTTGGCGCGTCGTTTTGGATTGCTTGGCTATGAGCCATCGACTCTCGAAGAAGTGGGCAAAGAGA
TTGGCTTGACGCGTGAGCGCGTGCGTCAGATCCAAGTTGAAGGGCTACGCAGATTGCGTGAGATCTTAGTCAAACAGGGA
CTTAACATGGAAAACCTGTTTGATGTCGATATGGATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (261-314)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (55-88)

• Sigma-70 region 2 (Sigma70_r2) (93-162)

• Sigma-70 region 3 (Sigma70_r3) (173-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.036	100	0.825