Detailed information NTG0343484

Bioinformatically predicted

Overview

• Name: ciaR
• Type: Regulator
• Locus tag: F9C43_RS12175
• Genome accession: NZ_CP045002
• Coordinates: 2541293..2541964 (+)
• Length: 223 a.a.
• NCBI ID: WP_003090494.1
• Uniprot ID: A0A0H2ZC88
• Organism: Pseudomonas aeruginosa strain PAG5
• Function: repress competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2536293..2546964

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F9C43_RS12140 (F9C43_12400)	ppyR	2536766..2537023 (+)	258	WP_003090502.1	psl/pyoverdine operon transcriptional regulator PpyR	-
F9C43_RS12145 (F9C43_12405)	-	2537010..2538203 (+)	1194	WP_003131074.1	NnrS family protein	-
F9C43_RS12150 (F9C43_12410)	-	2538204..2538470 (-)	267	WP_003090500.1	DUF5329 domain-containing protein	-
F9C43_RS12155 (F9C43_12415)	-	2538454..2539347 (-)	894	WP_003143812.1	hypothetical protein	-
F9C43_RS12160 (F9C43_12420)	-	2539374..2540456 (-)	1083	WP_003113385.1	hypothetical protein	-
F9C43_RS12165 (F9C43_12425)	-	2540671..2540979 (+)	309	WP_003090497.1	PepSY domain-containing protein	-
F9C43_RS12170 (F9C43_12430)	-	2540979..2541293 (+)	315	WP_003097704.1	PepSY domain-containing protein	-
F9C43_RS12175 (F9C43_12435)	ciaR	2541293..2541964 (+)	672	WP_003090494.1	two-component system response regulator CarR	Regulator
F9C43_RS12180 (F9C43_12440)	carS	2541961..2543298 (+)	1338	WP_003090493.1	two-component system sensor histidine kinase CarS	-
F9C43_RS12185 (F9C43_12445)	-	2543389..2543697 (+)	309	WP_034002346.1	hypothetical protein	-
F9C43_RS34660	-	2543702..2544238 (-)	537	Protein_2404	methyl-accepting chemotaxis protein	-
F9C43_RS34665	-	2544608..2545846 (-)	1239	Protein_2405	chemotaxis protein	-

Sequence

Protein

• Length: 223 a.a.
• Molecular weight: 24729.20 Da
• Isoelectric Point: 5.8445

>NTDB_id=343484 F9C43_RS12175 WP_003090494.1 2541293..2541964(+) (ciaR) [Pseudomonas aeruginosa strain PAG5]
MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGLEILQEWRGLGLATPVLILTA
RGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAHGLANQSQLEAAGLRLDEQRQCVCLNGADVDLTAAEFRLLR
YFMLHPGQVLSKGHLAEHLYDGETERDSNVIEVHVNHLRRKLGREVIETRRGQGYRYAGVAAG

Nucleotide

• Length: 672 bp

>NTDB_id=343484 F9C43_RS12175 WP_003090494.1 2541293..2541964(+) (ciaR) [Pseudomonas aeruginosa strain PAG5]
ATGCGGTTGCTGCTGGTTGAGGATCACGTTCCCCTGGCCGACGAACTGATGGCCAGCCTGACCCGCCAGGGCTACGCGGT
GGACTGGCTGGCCGACGGCCGCGACGCGGCGGTGCAGGGCGCCAGCGAGCCCTACGATCTGATCATCCTCGACCTCGGCC
TGCCCGGGCGTCCCGGCCTGGAGATACTCCAGGAGTGGCGTGGGCTGGGACTCGCGACTCCGGTGCTGATCCTCACCGCG
CGCGGTTCCTGGGCCGAACGCATCGATGGGCTCAAGGCCGGTGCCGACGACTACCTGACCAAGCCGTTCCATCCGGAAGA
GCTGGCCTTGCGCATCCAGGCCCTGTTGCGCCGCGCCCATGGGCTGGCCAACCAGAGCCAGCTGGAGGCCGCCGGGCTGC
GCCTGGACGAGCAGCGCCAGTGCGTGTGCCTGAACGGCGCCGACGTCGACCTGACCGCCGCCGAATTCCGCCTGCTGCGC
TATTTCATGCTGCACCCCGGCCAGGTCCTGTCCAAGGGGCACCTGGCCGAGCATCTGTACGACGGCGAGACCGAACGCGA
TTCCAACGTCATCGAGGTCCACGTCAACCACCTGCGGCGCAAGCTCGGCCGCGAGGTGATCGAGACCCGCCGTGGCCAGG
GCTACCGCTACGCCGGGGTGGCCGCCGGATGA

Domains

Predicted by InterProScan.

• Response regulator receiver domain (Response_reg) (4-112)

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (147-216)

3D structure

• AlphaFold DB: A0A0H2ZC88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ciaR	Streptococcus mutans UA159	37.727	98.655	0.372
ciaR	Streptococcus pneumoniae Rx1	37.273	98.655	0.368
ciaR	Streptococcus pneumoniae D39	37.273	98.655	0.368
ciaR	Streptococcus pneumoniae R6	37.273	98.655	0.368
ciaR	Streptococcus pneumoniae TIGR4	37.273	98.655	0.368
micA	Streptococcus pneumoniae Cp1015	35.683	100	0.363
vicR	Streptococcus mutans UA159	35.526	100	0.363