Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   F8M43_RS09025 Genome accession   NZ_CP044498
Coordinates   1727474..1727905 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain ms-2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1722474..1732905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS09005 spoVS 1723035..1723295 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  F8M43_RS09010 tdh 1723561..1724604 (+) 1044 WP_029726482.1 L-threonine 3-dehydrogenase -
  F8M43_RS09015 kbl 1724617..1725795 (+) 1179 WP_014664025.1 glycine C-acetyltransferase -
  F8M43_RS09020 miaB 1725943..1727472 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  F8M43_RS09025 ymcA 1727474..1727905 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  F8M43_RS09030 cotE 1728167..1728712 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  F8M43_RS09035 hexA 1728845..1731421 (+) 2577 WP_029726481.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=343210 F8M43_RS09025 WP_003231834.1 1727474..1727905(+) (ymcA) [Bacillus subtilis strain ms-2]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=343210 F8M43_RS09025 WP_003231834.1 1727474..1727905(+) (ymcA) [Bacillus subtilis strain ms-2]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1