Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SACTE_RS15145 Genome accession   NC_015953
Coordinates   3411410..3412009 (-) Length   199 a.a.
NCBI ID   WP_014046904.1    Uniprot ID   A0ABU2RGB0
Organism   Streptomyces sp. SirexAA-E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3406410..3417009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SACTE_RS15125 (SACTE_3050) - 3407089..3407664 (-) 576 WP_014046900.1 SigE family RNA polymerase sigma factor -
  SACTE_RS15130 (SACTE_3051) - 3408024..3409088 (-) 1065 WP_014046901.1 aspartate-semialdehyde dehydrogenase -
  SACTE_RS15135 (SACTE_3052) - 3409085..3410356 (-) 1272 WP_014046902.1 aspartate kinase -
  SACTE_RS15140 (SACTE_3053) - 3410666..3411325 (-) 660 WP_014046903.1 DUF5063 domain-containing protein -
  SACTE_RS15145 (SACTE_3054) recR 3411410..3412009 (-) 600 WP_014046904.1 recombination mediator RecR Machinery gene
  SACTE_RS15150 (SACTE_3055) - 3412114..3412449 (-) 336 WP_014046905.1 YbaB/EbfC family nucleoid-associated protein -
  SACTE_RS15155 (SACTE_3056) - 3412822..3413610 (+) 789 WP_014046906.1 SLATT domain-containing protein -
  SACTE_RS15160 (SACTE_3057) - 3413662..3414312 (-) 651 WP_014046907.1 hypothetical protein -
  SACTE_RS15165 (SACTE_3058) - 3414413..3415132 (-) 720 WP_014046908.1 GntR family transcriptional regulator -
  SACTE_RS15170 (SACTE_3059) - 3415231..3416622 (-) 1392 WP_014046909.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21943.27 Da        Isoelectric Point: 5.1777

>NTDB_id=34315 SACTE_RS15145 WP_014046904.1 3411410..3412009(-) (recR) [Streptomyces sp. SirexAA-E]
MYEGVVQELIDELGRLPGVGPKSAQRIAFHVLQAEPTDVRRLAHALLEVKDKVRFCEVCGNVAQQEQCAICRDARRDRTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=34315 SACTE_RS15145 WP_014046904.1 3411410..3412009(-) (recR) [Streptomyces sp. SirexAA-E]
TTGTACGAAGGCGTGGTGCAGGAGCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTCCTGCAGGCGGAGCCCACCGACGTACGCCGACTGGCCCACGCCCTCCTCGAGGTCAAGGACAAGGTCC
GCTTCTGCGAGGTCTGCGGCAACGTGGCGCAGCAGGAGCAGTGCGCCATCTGCCGGGACGCGCGCCGTGACCGGACGGTC
ATCTGCGTGGTCGAGGAGCCCAAGGACGTCGTCGCGATCGAGCGGACCCGGGAATTCCGGGGCCGCTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGACCTGCGCATCCGGGAGCTGCTGGCCCGGCTCGCGGACGGCA
CGATCACGGAGCTGATCCTGGCCACGGACCCCAACCTGGAGGGCGAGGCCACCGCGACCTACCTCGCCCGCATGGTGAAG
CCCATGGGCCTGCGGGTGACCCGGCTGGCCAGCGGCCTGCCGGTGGGCGGCGACCTGGAGTACGCCGACGAGGTCACCCT
CGGCCGCGCGTTCGAGGGGAGGCGGCTGCTCGATGTGTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452

Multiple sequence alignment