Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   SACTE_RS13920 Genome accession   NC_015953
Coordinates   3156577..3157989 (+) Length   470 a.a.
NCBI ID   WP_014046668.1    Uniprot ID   A0ABU2RZ34
Organism   Streptomyces sp. SirexAA-E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3151577..3162989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SACTE_RS35575 - 3151721..3151873 (-) 153 Protein_2788 TetR/AcrR family transcriptional regulator -
  SACTE_RS13900 (SACTE_2804) - 3151870..3152679 (-) 810 WP_014046664.1 sugar phosphate isomerase/epimerase -
  SACTE_RS13905 (SACTE_2805) - 3152774..3153721 (-) 948 WP_014046665.1 Ppx/GppA phosphatase family protein -
  SACTE_RS13910 (SACTE_2806) - 3153763..3154602 (+) 840 WP_014046666.1 hypothetical protein -
  SACTE_RS13915 (SACTE_2807) - 3154639..3156441 (-) 1803 WP_014046667.1 hypothetical protein -
  SACTE_RS13920 (SACTE_2808) radA/sms 3156577..3157989 (+) 1413 WP_014046668.1 DNA repair protein RadA Machinery gene
  SACTE_RS13925 (SACTE_2809) disA 3158070..3159194 (+) 1125 WP_026359248.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  SACTE_RS13930 (SACTE_2810) - 3159234..3160082 (-) 849 WP_202434226.1 hypothetical protein -
  SACTE_RS13935 (SACTE_2811) - 3160343..3161245 (+) 903 WP_014046671.1 A/G-specific adenine glycosylase -
  SACTE_RS13940 (SACTE_2812) - 3161464..3162048 (+) 585 WP_014046672.1 SigE family RNA polymerase sigma factor -
  SACTE_RS13945 (SACTE_2813) - 3162036..3162770 (+) 735 WP_014046673.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49618.65 Da        Isoelectric Point: 8.2640

>NTDB_id=34310 SACTE_RS13920 WP_014046668.1 3156577..3157989(+) (radA/sms) [Streptomyces sp. SirexAA-E]
MAARTKSTKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTRVPE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEDHRTLYVTAEESASQVRLRADRIGAIDDHLFLAAETDLSAV
LGHLDAVNPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAAGDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFRHALVPRDPGRVPSGMKVTEVADMGDALRALPRRSRSDGPREDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=34310 SACTE_RS13920 WP_014046668.1 3156577..3157989(+) (radA/sms) [Streptomyces sp. SirexAA-E]
ATGGCTGCCCGTACAAAATCCACGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCGGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTCCGCACCACGGCCGCGG
GCCGGGTCTCCACCGCCGCCCTGCCGATCGGCCAGGTCGACAGCAGGCAGGCCACGGCCCGCTCCACGCGCGTCCCCGAG
CTGGACCGGGTGCTCGGCGGCGGGCTCGTGCCCGGCGCCGTCGTGCTGCTCGCCGGCGAGCCCGGTGTGGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCCGCGAGCGAGGACCACCGCACGCTCTACGTCACGGCCGAGGAGTCGGCGAGCC
AGGTGCGGCTGCGGGCGGACCGGATCGGGGCGATCGACGACCATCTCTTCCTGGCCGCGGAGACCGACCTGTCGGCGGTC
CTGGGCCACCTGGACGCGGTCAACCCCTCGCTGCTCGTCCTCGACTCCGTGCAGACCGTCGCCTCGCCCGAGATCGACGG
CGCCCCGGGCGGCATGGCGCAGGTCCGCGAGGTGGCGGGCGCGCTGATCCGGGCCTCGAAGGAGCGGGGCATGTCGACAC
TCCTGGTCGGCCACGTCACCAAGGACGGCGCGATCGCGGGGCCCCGGCTGCTGGAGCACCTGGTCGACGTGGTGCTGTCC
TTCGAGGGCGACCGGCACGCACGCCTCCGTCTCGTCCGGGGCGTCAAGAACCGCTACGGCGCCACGGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGTCTCACCGACCCCTCGGGCCTCTTCCTCACCCGCCGCGACGAGCCGGTGC
CGGGCACCTGTCTGACGGTCACCCTGGAAGGAAAGCGTCCCCTCGTCGCGGAGGTGCAGGCGCTGACGGTCGACTCGCAG
ATCCCGTCGCCCCGTCGCACGACCTCCGGCCTGGAGACGTCCCGGGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGGGG
CCGGATCAGCGCGCTCGGCAAGCGCGACATCTACAGCGCGACGGTGGGCGGCGTGAAGCTCACCGAGCCCGCGGCGGACC
TGGCGATCGCGCTGGCGCTGGCCAGCGCGGCCGGGGACACACCGCTCCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGG
CTCGCGGGCGAGGTCAGGAGGGTGACGGGGGTGCAGCGCAGACTGGCGGAGGCACACCGTCTGGGGTTCCGTCACGCCCT
GGTGCCGAGGGACCCGGGACGGGTCCCGTCCGGTATGAAGGTCACAGAAGTCGCCGACATGGGTGACGCCCTGCGCGCCC
TCCCCCGCCGGTCTCGTTCGGACGGACCACGGGAGGACGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(75-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.805

96.17

0.421
  radA Streptococcus pneumoniae Rx1

42.07

96.596

0.406
  radA Streptococcus pneumoniae D39

42.07

96.596

0.406
  radA Streptococcus pneumoniae R6

42.07

96.596

0.406
  radA Streptococcus pneumoniae TIGR4

42.07

96.596

0.406
  radA Streptococcus mitis NCTC 12261

43.692

91.064

0.398
  radA Streptococcus mitis SK321

43.692

91.064

0.398

Multiple sequence alignment