Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   F8B64_RS02995 Genome accession   NZ_CP044497
Coordinates   596928..597530 (-) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae strain PittGG     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 591928..602530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8B64_RS02975 (F8B64_02975) - 592292..593962 (+) 1671 WP_012055037.1 fructose-specific PTS transporter subunit EIIC -
  F8B64_RS02985 (F8B64_02985) secG 594507..594848 (-) 342 WP_012055036.1 preprotein translocase subunit SecG -
  F8B64_RS02990 (F8B64_02990) - 594957..596912 (-) 1956 WP_012055035.1 DNA topoisomerase III -
  F8B64_RS02995 (F8B64_02995) recR 596928..597530 (-) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  F8B64_RS03000 (F8B64_03000) - 597588..597917 (-) 330 WP_011961681.1 YbaB/EbfC family nucleoid-associated protein -
  F8B64_RS03005 (F8B64_03005) - 598070..598915 (-) 846 WP_151433408.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  F8B64_RS03010 (F8B64_03010) - 598988..601582 (-) 2595 WP_012055034.1 penicillin-binding protein 1A -
  F8B64_RS03015 (F8B64_03015) comA 601681..602478 (+) 798 WP_012055033.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=343098 F8B64_RS02995 WP_005626527.1 596928..597530(-) (recR) [Haemophilus influenzae strain PittGG]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=343098 F8B64_RS02995 WP_005626527.1 596928..597530(-) (recR) [Haemophilus influenzae strain PittGG]
ATGCAAAGCAGTCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCTGGCGTAGGGCCTAAATCGGCGCAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGTGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCTATGTCTAAAA
TTGGCCATTGTTCACAATGTCGAGACTTTACGGAAGAAGATACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACAGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGTATTGGACCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAACCCAACTGTGGAAGGCGATGCAACAGCAAATTACATTGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCTGTCGGAGGGGAACTTGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment