Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | Kp711_RS23750 | Genome accession | NZ_CP035540 |
| Coordinates | 4339317..4340117 (+) | Length | 266 a.a. |
| NCBI ID | WP_002888947.1 | Uniprot ID | - |
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain CCRI-22199 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4334317..4345117
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Kp711_RS23715 (Kp711_4240) | gspH | 4334473..4334988 (+) | 516 | WP_004151939.1 | type II secretion system minor pseudopilin GspH | - |
| Kp711_RS23720 (Kp711_4241) | gspI | 4334985..4335350 (+) | 366 | WP_002889025.1 | type II secretion system minor pseudopilin GspI | - |
| Kp711_RS23725 (Kp711_4242) | gspJ | 4335347..4335943 (+) | 597 | WP_004151940.1 | type II secretion system minor pseudopilin GspJ | - |
| Kp711_RS23730 (Kp711_4243) | gspK | 4335940..4336926 (+) | 987 | WP_004151941.1 | type II secretion system minor pseudopilin GspK | - |
| Kp711_RS23735 (Kp711_4244) | gspL | 4336913..4338106 (+) | 1194 | WP_004151942.1 | type II secretion system protein GspL | - |
| Kp711_RS23740 (Kp711_4245) | - | 4338099..4338584 (+) | 486 | WP_004151943.1 | type II secretion system protein M | - |
| Kp711_RS23745 (Kp711_4246) | - | 4338574..4339320 (+) | 747 | WP_004145897.1 | type II secretion system protein N | - |
| Kp711_RS23750 (Kp711_4247) | pilD | 4339317..4340117 (+) | 801 | WP_002888947.1 | prepilin peptidase | Machinery gene |
| Kp711_RS23755 (Kp711_4248) | hrpB | 4340165..4342594 (-) | 2430 | WP_004151944.1 | ATP-dependent helicase HrpB | - |
| Kp711_RS23760 (Kp711_4249) | thpR | 4342667..4343203 (+) | 537 | WP_004145901.1 | RNA 2',3'-cyclic phosphodiesterase | - |
| Kp711_RS23765 (Kp711_4250) | sfsA | 4343203..4343919 (+) | 717 | WP_002888848.1 | DNA/RNA nuclease SfsA | - |
| Kp711_RS23770 (Kp711_4251) | dksA | 4344082..4344537 (+) | 456 | WP_002888845.1 | RNA polymerase-binding protein DksA | - |
Sequence
Protein
Download Length: 266 a.a. Molecular weight: 29419.04 Da Isoelectric Point: 8.8894
>NTDB_id=343059 Kp711_RS23750 WP_002888947.1 4339317..4340117(+) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain CCRI-22199]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV
Nucleotide
Download Length: 801 bp
>NTDB_id=343059 Kp711_RS23750 WP_002888947.1 4339317..4340117(+) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain CCRI-22199]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
49.434 |
99.624 |
0.492 |
| pilD | Vibrio campbellii strain DS40M4 |
46.182 |
100 |
0.477 |
| pilD | Acinetobacter nosocomialis M2 |
46.008 |
98.872 |
0.455 |
| pilD | Acinetobacter baumannii D1279779 |
45.247 |
98.872 |
0.447 |
| pilD | Neisseria gonorrhoeae MS11 |
43.295 |
98.12 |
0.425 |