Detailed information    

insolico Bioinformatically predicted

Overview


Name   comFC/cflB   Type   Machinery gene
Locus tag   FSA28_RS02500 Genome accession   NZ_CP044495
Coordinates   502405..503070 (+) Length   221 a.a.
NCBI ID   WP_002270131.1    Uniprot ID   -
Organism   Streptococcus mutans strain UA140     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 497405..508070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA28_RS02480 (FSA28_0277) - 497962..499053 (+) 1092 WP_002267044.1 glycerol dehydrogenase -
  FSA28_RS02485 (FSA28_0278) cysK 499387..500313 (-) 927 WP_002263028.1 cysteine synthase A -
  FSA28_RS02490 (FSA28_0279) - 500404..501033 (-) 630 WP_002263027.1 YigZ family protein -
  FSA28_RS02495 (FSA28_0280) - 501106..502408 (+) 1303 Protein_433 DEAD/DEAH box helicase -
  FSA28_RS02500 (FSA28_0281) comFC/cflB 502405..503070 (+) 666 WP_002270131.1 ComF family protein Machinery gene
  FSA28_RS02505 (FSA28_0282) raiA 503149..503697 (+) 549 WP_002263024.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FSA28_RS02510 (FSA28_0283) - 503821..504915 (+) 1095 WP_088741851.1 hypothetical protein -
  FSA28_RS02515 (FSA28_0284) - 504934..506634 (+) 1701 WP_002291114.1 zinc ribbon domain-containing protein -
  FSA28_RS02520 (FSA28_0285) - 506714..507349 (-) 636 WP_002271877.1 hypothetical protein -

Sequence


Protein


Download         Length: 221 a.a.        Molecular weight: 26031.08 Da        Isoelectric Point: 8.9825

>NTDB_id=342991 FSA28_RS02500 WP_002270131.1 502405..503070(+) (comFC/cflB) [Streptococcus mutans strain UA140]
MNCLICHLPFESKYYFYSIFFLKTSRDFVCPPCFAKFQFISEKHCLNCYKEGEGDICQDCHKWQNLKKEVHHKALFCYNQ
AMKDYFSAYKFQGDYLLRKVFIKPIKEALREYTNYTLVPIPLSSSSLENRGFNQVQAFLDEAKLSYHDLLGKEDGSVKQS
SKTRQERLKTQQNFYLRKHKELPDKVMLVDDIYTTGMTIQLASQLLRENGVKTIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=342991 FSA28_RS02500 WP_002270131.1 502405..503070(+) (comFC/cflB) [Streptococcus mutans strain UA140]
ATGAACTGTCTCATTTGTCACTTGCCTTTTGAGAGTAAATATTATTTTTATTCTATTTTCTTCTTGAAAACTTCAAGAGA
TTTTGTTTGCCCACCTTGCTTTGCGAAATTTCAATTCATATCTGAAAAACATTGCCTAAATTGTTATAAGGAGGGAGAAG
GAGATATCTGTCAAGATTGCCACAAATGGCAAAATCTCAAAAAGGAGGTTCATCACAAGGCTCTCTTTTGTTACAATCAA
GCTATGAAAGATTATTTCAGTGCTTACAAATTTCAAGGGGATTATCTTTTAAGAAAGGTCTTTATAAAGCCTATTAAAGA
AGCCTTAAGAGAGTATACTAATTATACTTTGGTTCCCATTCCACTCAGCTCTTCAAGTTTAGAGAATCGTGGTTTTAATC
AAGTGCAAGCTTTTTTAGATGAGGCAAAATTGTCTTATCATGATTTATTAGGCAAAGAAGATGGTAGTGTAAAACAATCA
AGTAAAACACGTCAAGAACGCCTAAAGACTCAACAAAACTTTTATTTAAGGAAACATAAAGAATTACCTGATAAAGTGAT
GCTAGTTGATGATATCTATACAACGGGTATGACAATTCAATTGGCCAGTCAATTATTGCGTGAAAATGGTGTGAAAACAA
TAAAATCCTTTTCTTTAGCAAGGTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

44.796

100

0.448

  comFC/cflB Streptococcus mitis NCTC 12261

44.796

100

0.448

  comFC/cflB Streptococcus pneumoniae Rx1

44.344

100

0.443

  comFC/cflB Streptococcus pneumoniae D39

44.344

100

0.443

  comFC/cflB Streptococcus pneumoniae R6

44.344

100

0.443

  comFC/cflB Streptococcus mitis SK321

43.891

100

0.439


Multiple sequence alignment