Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   EU243_RS08975 Genome accession   NZ_CP035533
Coordinates   1761342..1761986 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain DTU001     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1756342..1766986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EU243_RS08945 (EU243_09090) - 1756741..1757082 (-) 342 WP_046560014.1 hypothetical protein -
  EU243_RS08955 (EU243_09100) degQ 1757548..1757688 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  EU243_RS08960 (EU243_09105) comQ 1757873..1758805 (+) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  EU243_RS08970 (EU243_09115) comP 1758958..1761261 (+) 2304 WP_003152050.1 histidine kinase Regulator
  EU243_RS08975 (EU243_09120) comA 1761342..1761986 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  EU243_RS08980 (EU243_09125) - 1762008..1762391 (+) 384 WP_003152054.1 hotdog fold thioesterase -
  EU243_RS08985 (EU243_09130) mnhG 1762431..1762804 (-) 374 Protein_1737 monovalent cation/H(+) antiporter subunit G -
  EU243_RS08990 (EU243_09135) - 1762788..1763072 (-) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  EU243_RS08995 (EU243_09140) - 1763072..1763548 (-) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  EU243_RS09000 (EU243_09145) - 1763554..1765035 (-) 1482 WP_003152061.1 Na+/H+ antiporter subunit D -
  EU243_RS09005 (EU243_09150) - 1765028..1765369 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  EU243_RS09010 (EU243_09155) - 1765369..1765800 (-) 432 WP_046560011.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=342991 EU243_RS08975 WP_003152052.1 1761342..1761986(+) (comA) [Bacillus velezensis strain DTU001]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=342991 EU243_RS08975 WP_003152052.1 1761342..1761986(+) (comA) [Bacillus velezensis strain DTU001]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment