Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   FSA40_RS10140 Genome accession   NZ_CP044493
Coordinates   1995921..1997012 (+) Length   363 a.a.
NCBI ID   WP_002264240.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1990921..2002012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS10115 (FSA40_2028) pgsA 1991330..1991872 (-) 543 WP_002267084.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FSA40_RS10120 (FSA40_2029) - 1991884..1992861 (-) 978 WP_002267085.1 helix-turn-helix domain-containing protein -
  FSA40_RS10125 (FSA40_2030) - 1992934..1994226 (-) 1293 WP_002264239.1 pitrilysin family protein -
  FSA40_RS10130 (FSA40_2031) - 1994228..1995475 (-) 1248 WP_002279892.1 pitrilysin family protein -
  FSA40_RS10135 yaaA 1995554..1995918 (+) 365 Protein_1894 S4 domain-containing protein YaaA -
  FSA40_RS10140 (FSA40_2033) recF 1995921..1997012 (+) 1092 WP_002264240.1 DNA replication/repair protein RecF Machinery gene
  FSA40_RS10145 (FSA40_2034) guaB 1997175..1998656 (-) 1482 WP_002296869.1 IMP dehydrogenase -
  FSA40_RS10150 (FSA40_2035) trpS 1998813..1999835 (-) 1023 WP_151416472.1 tryptophan--tRNA ligase -
  FSA40_RS10155 (FSA40_2036) - 2000268..2001887 (+) 1620 WP_002266410.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 42042.29 Da        Isoelectric Point: 9.8334

>NTDB_id=342970 FSA40_RS10140 WP_002264240.1 1995921..1997012(+) (recF) [Streptococcus mutans strain MD]
MWIEKINLKHYRNYTAIESEFSQSLNVFVGQNAQGKTNFLEAIYFLSLTRSHRTRSDKELIQFGQKELNVSGLLNRVNGK
IPLEINLSNKGRTTKINYLKQPKLSDYIGTMTVVLFAPEDLQLIKGSPSLRRKFIDIDLGQIKPIYLSDLSNYNHVLKQR
NAYLKSEKKVDTDFLFVLDEQLVDYGSKVIEHRLDFIQNLTKEADKYHFSISNQQEHLKISYLSSVKFDHKKNIRDNFLN
LLQKNRQGDIFKKNTSVGPHRDDLAFFINQMNANFGSQGQHRSLILSLKLAEIELIKTVTGDYPILLLDDVMSELDNYRQ
IKLLEGIKDNVQTFITTTSLEHLQQLPKKLKLFTINQGKVLSE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=342970 FSA40_RS10140 WP_002264240.1 1995921..1997012(+) (recF) [Streptococcus mutans strain MD]
ATGTGGATAGAAAAAATTAATTTAAAACATTATCGCAATTATACAGCCATTGAATCTGAATTTTCCCAAAGTCTTAATGT
TTTTGTGGGACAAAATGCTCAAGGAAAAACCAATTTCCTAGAGGCTATTTATTTTTTATCTTTAACCCGCAGTCATCGAA
CACGATCTGACAAAGAACTTATTCAATTTGGTCAAAAAGAATTAAATGTTTCTGGCCTTCTTAATCGTGTCAATGGCAAA
ATTCCTCTGGAAATCAACTTATCTAATAAAGGCCGAACAACAAAAATAAATTATCTCAAACAACCTAAACTTTCAGACTA
TATTGGAACAATGACTGTTGTTCTCTTTGCTCCAGAAGATCTTCAACTAATAAAAGGCTCCCCAAGTCTCAGAAGAAAGT
TTATTGACATTGATTTAGGACAAATCAAGCCTATTTACTTATCTGATTTATCAAATTATAATCATGTTCTTAAACAACGA
AATGCCTATTTAAAATCAGAGAAGAAGGTTGATACTGATTTTCTTTTCGTTCTAGATGAACAATTGGTAGATTATGGTAG
TAAGGTTATTGAGCATCGCCTTGATTTTATTCAAAATTTAACTAAAGAAGCTGATAAATATCATTTCTCTATTTCAAATC
AACAGGAACATTTAAAAATTTCCTACCTTTCTTCTGTTAAATTTGATCATAAAAAAAATATTCGTGATAACTTTTTAAAC
CTGCTACAAAAAAATCGGCAGGGTGATATTTTCAAAAAGAACACCAGTGTTGGTCCGCACCGCGATGATTTAGCCTTTTT
CATCAATCAAATGAACGCTAACTTTGGTAGTCAAGGACAACATCGCAGCCTTATTTTATCTTTAAAGCTGGCTGAGATTG
AACTTATAAAAACAGTCACTGGGGATTATCCTATTCTCTTGTTAGATGATGTCATGAGTGAACTTGATAATTATAGACAA
ATCAAACTTTTAGAAGGCATCAAAGATAATGTTCAGACCTTTATAACAACAACTAGCCTTGAACATCTTCAACAACTCCC
TAAGAAACTAAAGTTATTTACTATCAACCAAGGAAAAGTGCTATCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

64.722

99.174

0.642
  recF Bacillus subtilis subsp. subtilis str. 168

43.902

100

0.446

Multiple sequence alignment