Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | EUB48_RS18245 | Genome accession | NZ_CP035503 |
| Coordinates | 3778220..3779650 (+) | Length | 476 a.a. |
| NCBI ID | WP_142820448.1 | Uniprot ID | A0A515DF27 |
| Organism | Rhodoferax sediminis strain CHu59-6-5 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3773220..3784650
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EUB48_RS18225 (EUB48_18195) | ffh | 3774006..3775370 (-) | 1365 | WP_142820445.1 | signal recognition particle protein | - |
| EUB48_RS18230 (EUB48_18200) | - | 3775467..3776276 (+) | 810 | WP_142820446.1 | cytochrome C assembly family protein | - |
| EUB48_RS18235 (EUB48_18205) | - | 3776273..3776503 (+) | 231 | WP_244618263.1 | PP0621 family protein | - |
| EUB48_RS18240 (EUB48_18210) | - | 3776504..3778216 (+) | 1713 | WP_142820447.1 | sensor histidine kinase | - |
| EUB48_RS18245 (EUB48_18215) | pilR | 3778220..3779650 (+) | 1431 | WP_142820448.1 | sigma-54-dependent transcriptional regulator | Regulator |
| EUB48_RS18250 (EUB48_18220) | ampD | 3779634..3780248 (+) | 615 | WP_142820449.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| EUB48_RS18255 (EUB48_18225) | - | 3780645..3783599 (+) | 2955 | WP_142820450.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
Sequence
Protein
Download Length: 476 a.a. Molecular weight: 51612.76 Da Isoelectric Point: 5.9290
>NTDB_id=342897 EUB48_RS18245 WP_142820448.1 3778220..3779650(+) (pilR) [Rhodoferax sediminis strain CHu59-6-5]
MSANPSPSPAQVLVVDDEPDLRDLYELTLTREGYHVDAAANLAQAWLCLKEKRFDAVITDMRLPDGLGMELLTGMQAQQR
AERCIVMTAYGSAENAVEALKAGAFDYLTKPVDLKQFRTVVASAIQDTGQIYKSGRGTPGPAKAAGALDRLDSEPASLRR
MVGDSEPMRLVKQRIVKVARSMAPVLVRGESGTGKELVARAIHACSHRAEAPFVAVNCGAIPENLLEAEFFGAKKGSYTG
ATQDRDGYFQAARKGTLFLDEIGDLPLAMQSKLLRAIQERSVRSLGSTQEDAVDVRIVSATHKDLAADVAAGRFRQDLFF
RLNVIEIAVPPLRERRSDLPALCEALLAKIAQESDMPVPALSSALLAQLASHPLSGNVRELENLLHRAVALSDGSELHVD
FVPGQPSNGPPAVTGDLQSYLDQQEREVLVKTLTETGFNRTAAAARLGLNLRQIRYRIARLNITTPFGDDAHDDTP
MSANPSPSPAQVLVVDDEPDLRDLYELTLTREGYHVDAAANLAQAWLCLKEKRFDAVITDMRLPDGLGMELLTGMQAQQR
AERCIVMTAYGSAENAVEALKAGAFDYLTKPVDLKQFRTVVASAIQDTGQIYKSGRGTPGPAKAAGALDRLDSEPASLRR
MVGDSEPMRLVKQRIVKVARSMAPVLVRGESGTGKELVARAIHACSHRAEAPFVAVNCGAIPENLLEAEFFGAKKGSYTG
ATQDRDGYFQAARKGTLFLDEIGDLPLAMQSKLLRAIQERSVRSLGSTQEDAVDVRIVSATHKDLAADVAAGRFRQDLFF
RLNVIEIAVPPLRERRSDLPALCEALLAKIAQESDMPVPALSSALLAQLASHPLSGNVRELENLLHRAVALSDGSELHVD
FVPGQPSNGPPAVTGDLQSYLDQQEREVLVKTLTETGFNRTAAAARLGLNLRQIRYRIARLNITTPFGDDAHDDTP
Nucleotide
Download Length: 1431 bp
>NTDB_id=342897 EUB48_RS18245 WP_142820448.1 3778220..3779650(+) (pilR) [Rhodoferax sediminis strain CHu59-6-5]
ATGTCAGCCAACCCTTCCCCCTCCCCGGCGCAGGTCCTGGTCGTCGACGACGAGCCCGACCTGCGCGACCTGTATGAGCT
CACGCTGACCCGCGAGGGCTATCACGTGGACGCCGCGGCCAATCTTGCCCAGGCCTGGCTTTGCCTGAAAGAAAAGCGCT
TCGATGCGGTGATTACCGACATGCGCCTGCCCGACGGCCTGGGCATGGAACTGCTCACCGGCATGCAGGCACAACAGCGT
GCGGAGCGCTGCATCGTGATGACGGCCTACGGCTCCGCCGAAAACGCGGTGGAAGCCCTGAAGGCCGGCGCGTTCGACTA
CCTCACCAAGCCGGTGGACCTGAAGCAGTTCCGCACGGTGGTGGCCTCCGCCATCCAGGACACCGGCCAGATTTATAAAA
GTGGGCGTGGCACACCGGGTCCGGCCAAGGCCGCCGGCGCGCTGGATCGGCTGGACAGCGAACCGGCTTCGCTGCGGCGC
ATGGTCGGTGACTCCGAGCCGATGCGCCTAGTCAAGCAGCGCATCGTCAAGGTGGCGCGCAGCATGGCGCCGGTATTGGT
ACGCGGCGAGTCCGGCACCGGCAAGGAACTGGTTGCGCGCGCCATCCACGCCTGCAGCCATCGCGCGGAGGCTCCCTTTG
TCGCCGTGAACTGCGGCGCCATTCCGGAGAATCTGCTGGAGGCCGAATTCTTCGGCGCCAAAAAGGGCTCCTACACCGGC
GCCACCCAGGATCGTGATGGCTACTTCCAGGCGGCGCGCAAGGGTACGTTGTTCCTCGATGAAATCGGCGACCTGCCGCT
GGCCATGCAGTCCAAGCTGCTGCGCGCCATCCAGGAGCGCAGCGTGCGCTCACTGGGCTCGACGCAGGAAGATGCGGTGG
ACGTGCGCATCGTCAGCGCCACGCACAAGGATCTGGCCGCCGATGTAGCGGCCGGGCGCTTTCGGCAGGACCTGTTTTTC
CGTCTCAACGTGATTGAGATTGCAGTGCCCCCGCTGCGCGAGCGGCGCAGCGACCTGCCGGCCCTGTGCGAGGCGCTGCT
GGCCAAAATTGCCCAGGAGTCCGACATGCCGGTGCCCGCGCTCTCAAGCGCCCTGCTGGCGCAACTGGCCTCGCACCCCC
TGAGCGGCAACGTCCGCGAGCTCGAAAACCTGCTGCATCGCGCCGTGGCGCTAAGCGACGGCAGCGAGTTGCATGTGGAC
TTTGTTCCGGGTCAGCCCTCCAACGGCCCGCCTGCCGTGACGGGCGATCTGCAAAGCTATCTGGACCAGCAGGAGCGCGA
AGTGCTGGTCAAAACGCTCACCGAGACCGGCTTCAACCGCACCGCTGCGGCGGCACGGCTGGGTTTGAATCTGCGCCAGA
TCCGTTACCGCATTGCACGCCTGAACATCACCACCCCGTTTGGTGACGATGCGCATGACGATACCCCCTGA
ATGTCAGCCAACCCTTCCCCCTCCCCGGCGCAGGTCCTGGTCGTCGACGACGAGCCCGACCTGCGCGACCTGTATGAGCT
CACGCTGACCCGCGAGGGCTATCACGTGGACGCCGCGGCCAATCTTGCCCAGGCCTGGCTTTGCCTGAAAGAAAAGCGCT
TCGATGCGGTGATTACCGACATGCGCCTGCCCGACGGCCTGGGCATGGAACTGCTCACCGGCATGCAGGCACAACAGCGT
GCGGAGCGCTGCATCGTGATGACGGCCTACGGCTCCGCCGAAAACGCGGTGGAAGCCCTGAAGGCCGGCGCGTTCGACTA
CCTCACCAAGCCGGTGGACCTGAAGCAGTTCCGCACGGTGGTGGCCTCCGCCATCCAGGACACCGGCCAGATTTATAAAA
GTGGGCGTGGCACACCGGGTCCGGCCAAGGCCGCCGGCGCGCTGGATCGGCTGGACAGCGAACCGGCTTCGCTGCGGCGC
ATGGTCGGTGACTCCGAGCCGATGCGCCTAGTCAAGCAGCGCATCGTCAAGGTGGCGCGCAGCATGGCGCCGGTATTGGT
ACGCGGCGAGTCCGGCACCGGCAAGGAACTGGTTGCGCGCGCCATCCACGCCTGCAGCCATCGCGCGGAGGCTCCCTTTG
TCGCCGTGAACTGCGGCGCCATTCCGGAGAATCTGCTGGAGGCCGAATTCTTCGGCGCCAAAAAGGGCTCCTACACCGGC
GCCACCCAGGATCGTGATGGCTACTTCCAGGCGGCGCGCAAGGGTACGTTGTTCCTCGATGAAATCGGCGACCTGCCGCT
GGCCATGCAGTCCAAGCTGCTGCGCGCCATCCAGGAGCGCAGCGTGCGCTCACTGGGCTCGACGCAGGAAGATGCGGTGG
ACGTGCGCATCGTCAGCGCCACGCACAAGGATCTGGCCGCCGATGTAGCGGCCGGGCGCTTTCGGCAGGACCTGTTTTTC
CGTCTCAACGTGATTGAGATTGCAGTGCCCCCGCTGCGCGAGCGGCGCAGCGACCTGCCGGCCCTGTGCGAGGCGCTGCT
GGCCAAAATTGCCCAGGAGTCCGACATGCCGGTGCCCGCGCTCTCAAGCGCCCTGCTGGCGCAACTGGCCTCGCACCCCC
TGAGCGGCAACGTCCGCGAGCTCGAAAACCTGCTGCATCGCGCCGTGGCGCTAAGCGACGGCAGCGAGTTGCATGTGGAC
TTTGTTCCGGGTCAGCCCTCCAACGGCCCGCCTGCCGTGACGGGCGATCTGCAAAGCTATCTGGACCAGCAGGAGCGCGA
AGTGCTGGTCAAAACGCTCACCGAGACCGGCTTCAACCGCACCGCTGCGGCGGCACGGCTGGGTTTGAATCTGCGCCAGA
TCCGTTACCGCATTGCACGCCTGAACATCACCACCCCGTTTGGTGACGATGCGCATGACGATACCCCCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
49.353 |
97.479 |
0.481 |
| pilR | Acinetobacter baumannii strain A118 |
41.09 |
100 |
0.412 |