Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EPH95_RS00715 Genome accession   NZ_CP035485
Coordinates   131218..132930 (+) Length   570 a.a.
NCBI ID   WP_142086466.1    Uniprot ID   A0A514LDI3
Organism   Salicibibacter halophilus strain NKC3-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 126218..137930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPH95_RS19105 (EPH95_00690) xseB 126295..126552 (+) 258 WP_405127406.1 exodeoxyribonuclease VII small subunit -
  EPH95_RS00695 (EPH95_00695) - 126729..127622 (+) 894 WP_227003992.1 polyprenyl synthetase family protein -
  EPH95_RS00700 (EPH95_00700) dxs 127899..129788 (+) 1890 WP_142086462.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EPH95_RS00705 (EPH95_00705) - 129754..130617 (+) 864 WP_227004112.1 TlyA family RNA methyltransferase -
  EPH95_RS00710 (EPH95_00710) ahrC 130700..131149 (+) 450 WP_142086464.1 transcriptional regulator AhrC/ArgR -
  EPH95_RS00715 (EPH95_00715) recN 131218..132930 (+) 1713 WP_142086466.1 DNA repair protein RecN Machinery gene
  EPH95_RS00720 (EPH95_00720) spoIVB 133084..134322 (+) 1239 WP_142086468.1 SpoIVB peptidase -
  EPH95_RS00725 (EPH95_00725) spo0A 134538..135329 (+) 792 WP_142086470.1 sporulation transcription factor Spo0A -
  EPH95_RS00730 (EPH95_00730) steA 135513..136583 (+) 1071 WP_142086472.1 putative cytokinetic ring protein SteA -
  EPH95_RS00735 (EPH95_00735) - 136580..136825 (-) 246 WP_142086474.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 570 a.a.        Molecular weight: 63635.60 Da        Isoelectric Point: 4.5903

>NTDB_id=342710 EPH95_RS00715 WP_142086466.1 131218..132930(+) (recN) [Salicibibacter halophilus strain NKC3-5]
MLEELTIRNFAIIEELTIPFASGLTVLTGETGAGKSIIIDALGLLAGGRGSVDFVRHESKKAEVEGLFIVPNDHLARERV
TSAGIECEEGMIVLRREISRKGKSVCRVNGQLVTLTTLRSIGQTLVDIHGQHEHQELLQMDKHSGMVDGYAASTLASLKS
DYEKHYETYLSIKNELQRLRNSDRENIQRLDLIQYQLEEINQAALSEPDEDEQLEQERYKLAHAEKLYELLQYAYTYLHD
EGKGLEWIRESAGHLKEASDIDPALLQTSEQVDSSFYMIEEASYSIREHIDQLDFDPVRLEQIESRLAEIDQLKRKYGGS
ITEILTFVDEIAAEQDALVNLDEHIRQYEEELKEKAAALFSAANALTNGRKEAAKTLSEAIERELADLFMEKTRFSVSFQ
PPVQGEEVQSNGQVKTFTKEGQERLEFYMSPNAGEPEKALAKIASGGEISRIMLALKRILSNASQRTALIFDEVDTGVSG
RVAQAIGEKIASIAAAETQVLCITHLPQVAALASTHMHIAKEEEQGRVQTTVTELGDTERVDELARMLSGTAVTTKTREN
ARELLDFATP

Nucleotide


Download         Length: 1713 bp        

>NTDB_id=342710 EPH95_RS00715 WP_142086466.1 131218..132930(+) (recN) [Salicibibacter halophilus strain NKC3-5]
ATGCTTGAAGAACTGACGATTCGTAATTTTGCGATCATCGAAGAGCTGACCATACCGTTTGCATCAGGATTAACGGTGCT
TACCGGGGAAACGGGAGCAGGAAAATCAATCATTATTGATGCCCTCGGGTTGCTGGCAGGCGGTCGCGGTTCTGTAGATT
TTGTGCGCCATGAAAGTAAAAAAGCGGAAGTCGAAGGGTTGTTTATCGTGCCAAATGACCATTTGGCACGTGAGCGTGTG
ACTTCTGCAGGCATAGAATGTGAAGAAGGAATGATCGTTTTACGCAGGGAGATATCCAGAAAAGGGAAGAGCGTTTGCAG
GGTCAATGGGCAACTCGTTACTTTAACGACGTTACGGTCGATTGGACAAACATTGGTGGATATTCACGGGCAGCATGAAC
ATCAGGAATTATTACAAATGGACAAGCACAGTGGAATGGTCGATGGATATGCCGCTTCGACATTGGCTTCGCTAAAATCC
GATTATGAAAAACATTATGAAACGTATTTGTCGATCAAAAATGAATTGCAACGCTTGAGGAACAGCGATCGTGAAAATAT
CCAACGGCTCGATCTCATCCAATATCAATTGGAGGAAATTAACCAAGCAGCATTATCAGAGCCCGATGAAGACGAGCAGT
TGGAACAAGAGCGCTATAAGTTGGCTCACGCGGAGAAATTATATGAGCTTTTGCAATACGCCTACACGTATTTGCATGAT
GAGGGGAAAGGTTTAGAATGGATCCGCGAATCCGCAGGCCATCTGAAAGAGGCAAGTGACATTGATCCAGCCTTACTCCA
AACGAGCGAGCAAGTGGATTCTAGTTTTTACATGATTGAAGAAGCGTCTTATTCGATTCGGGAACATATCGATCAACTCG
ACTTTGATCCTGTCCGGTTGGAACAAATCGAAAGCCGCTTGGCCGAAATCGACCAACTGAAACGAAAGTACGGGGGCTCC
ATTACAGAAATCTTGACATTTGTCGATGAAATCGCTGCAGAACAAGATGCGCTTGTAAACTTGGATGAACACATCCGCCA
GTATGAAGAGGAGTTAAAAGAAAAGGCCGCAGCCCTTTTTTCTGCAGCCAATGCGCTGACAAACGGGAGAAAAGAAGCTG
CGAAAACGCTTTCGGAAGCAATCGAACGCGAACTGGCCGATCTGTTTATGGAAAAAACTCGATTTTCCGTATCTTTTCAA
CCTCCGGTACAAGGCGAAGAAGTACAAAGCAACGGCCAGGTAAAAACCTTTACAAAAGAAGGGCAAGAACGGCTGGAGTT
TTACATGTCGCCGAATGCCGGCGAACCGGAGAAAGCTTTGGCAAAAATCGCTTCAGGCGGCGAAATTTCCCGTATTATGC
TCGCGCTTAAACGGATTTTGTCGAATGCGTCACAGCGGACTGCGCTGATCTTTGATGAAGTGGATACAGGGGTGAGCGGA
CGGGTCGCGCAAGCCATTGGCGAAAAAATTGCTTCGATCGCCGCCGCTGAAACCCAAGTCCTTTGCATCACCCATTTGCC
GCAAGTTGCGGCCCTGGCATCCACCCATATGCATATAGCCAAAGAAGAAGAACAAGGGCGTGTGCAGACAACGGTTACCG
AACTTGGGGATACGGAGCGTGTTGATGAGTTGGCGCGAATGCTTTCCGGAACCGCGGTAACGACAAAAACGCGTGAAAAC
GCGCGTGAACTTTTGGATTTTGCAACACCATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A514LDI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.944

99.649

0.488

Multiple sequence alignment