Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   F7V86_RS07155 Genome accession   NZ_CP044444
Coordinates   1372573..1373169 (+) Length   198 a.a.
NCBI ID   WP_003150697.1    Uniprot ID   A7Z0E4
Organism   Bacillus amyloliquefaciens strain KC41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1367573..1378169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS07130 - 1368920..1369471 (-) 552 WP_014416712.1 cysteine hydrolase family protein -
  F7V86_RS07135 tadA 1369554..1370036 (+) 483 WP_007615141.1 tRNA adenosine(34) deaminase TadA -
  F7V86_RS07145 dnaX 1370519..1372210 (+) 1692 WP_063636943.1 DNA polymerase III subunit gamma/tau -
  F7V86_RS07150 - 1372235..1372558 (+) 324 WP_003150700.1 YbaB/EbfC family nucleoid-associated protein -
  F7V86_RS07155 recR 1372573..1373169 (+) 597 WP_003150697.1 recombination protein RecR Machinery gene
  F7V86_RS07160 - 1373188..1373412 (+) 225 WP_104843025.1 YaaL family protein -
  F7V86_RS07165 - 1373473..1373736 (+) 264 WP_003150686.1 pro-sigmaK processing inhibitor BofA family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21990.53 Da        Isoelectric Point: 5.3504

>NTDB_id=342640 F7V86_RS07155 WP_003150697.1 1372573..1373169(+) (recR) [Bacillus amyloliquefaciens strain KC41]
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDTVLDFAKALVNAKRNLTYCSICGHITDQDPCYICEDTRRDKS
VICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=342640 F7V86_RS07155 WP_003150697.1 1372573..1373169(+) (recR) [Bacillus amyloliquefaciens strain KC41]
ATGCAGTATCCTGAACCAATATCAAAGCTGATTGACAGCTTTATGAAATTGCCAGGGATCGGACCGAAAACAGCGGTTCG
TCTGGCTTTTTTTGTTCTAGGTATGAAAGAAGACACAGTATTGGATTTTGCTAAGGCGCTTGTCAATGCGAAGCGGAATC
TGACATATTGCTCGATTTGCGGACATATAACAGATCAGGACCCTTGTTATATATGTGAGGACACAAGAAGGGATAAGTCT
GTTATTTGTGTCGTGCAGGACCCTAAGGATGTGATCGCAATGGAGAAAATGAAGGAATATAACGGCCAGTATCATGTTCT
TCACGGCGCGATTTCACCAATGGACGGCATCGGCCCGGAGGATATTAAGATTCCGGAGCTGCTGAAACGTCTTCAGGATG
ATCAAGTGACAGAAGTTATTCTCGCAACCAACCCTAATATTGAAGGGGAAGCAACAGCGATGTATATATCAAGGCTGTTA
AAGCCCTCAGGCATCAAGCTCTCCCGTATTGCCCACGGTCTGCCCGTCGGCGGTGATTTGGAATATGCTGATGAGGTCAC
TCTTTCAAAAGCTCTTGAAGGAAGACGTGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

98.99

100

0.99
  recR Streptococcus pneumoniae R6

62.626

100

0.626
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.551

98.99

0.52