Detailed information NTG0034261

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SALIVB_RS10270
• Genome accession: NC_015760
• Coordinates: 2202681..2203781 (+)
• Length: 366 a.a.
• NCBI ID: WP_013991340.1
• Uniprot ID: -
• Organism: Streptococcus salivarius CCHSS3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2197681..2208781

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SALIVB_RS10245 (SALIVB_2138)	pgsA	2198223..2198765 (-)	543	WP_002885640.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SALIVB_RS10250 (SALIVB_2139)	-	2198778..2199635 (-)	858	WP_013991336.1	helix-turn-helix domain-containing protein	-
SALIVB_RS10255 (SALIVB_2140)	yfmH	2199694..2200971 (-)	1278	WP_013991337.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SALIVB_RS10260 (SALIVB_2141)	yfmF	2200973..2202223 (-)	1251	WP_013991338.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SALIVB_RS10265 (SALIVB_2142)	yaaA	2202301..2202678 (+)	378	WP_013991339.1	S4 domain-containing protein YaaA	-
SALIVB_RS10270 (SALIVB_2143)	recF	2202681..2203781 (+)	1101	WP_013991340.1	DNA replication/repair protein RecF	Machinery gene
SALIVB_RS10275 (SALIVB_2144)	guaB	2203963..2205444 (-)	1482	WP_013991341.1	IMP dehydrogenase	-
SALIVB_RS10280 (SALIVB_2145)	trpS	2205623..2206645 (-)	1023	WP_002883969.1	tryptophan--tRNA ligase	-
SALIVB_RS10285 (SALIVB_2146)	-	2207074..2207946 (+)	873	WP_013991342.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42233.26 Da
• Isoelectric Point: 7.7930

>NTDB_id=34261 SALIVB_RS10270 WP_013991340.1 2202681..2203781(+) (recF) [Streptococcus salivarius CCHSS3]
MWLEKIDIQHFRNYTEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQFQQNTLKLNGIVHRHSGK
LPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQR
NAYLKSTDNVDINFLSVLDEQLSDFGTRVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENNKVIRESFLT
TLKQNHKRDIFKKNTGVGPHRDDLTFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTGEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPDLKTFLVKNGDIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=34261 SALIVB_RS10270 WP_013991340.1 2202681..2203781(+) (recF) [Streptococcus salivarius CCHSS3]
ATGTGGCTCGAAAAAATTGATATTCAACACTTTAGAAATTATACTGAAGCCTCTGTGAGCTTCTCACCTCATCTCAATAT
TTTTCTTGGTCGCAATGCCCAAGGAAAAACAAATATTCTTGAGGCCATCTATTTTCTAGCATTGACACGTAGTCATCGGA
CCCGTTCAGATAAAGAACTGATTCAATTTCAACAAAATACTCTCAAACTTAACGGCATCGTGCATCGTCATAGTGGGAAG
CTACCTCTGGAAATCAGTTTATCTAATAAAGGACGCATAACAAAGGTTAACCACCTCAAACAAGCTAAATTATCCGATTA
TATCGGTCACATGACTGTGGTGCTATTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGCCTGAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTATCTCTCAGACTTATCAAGTTATAATCATGTACTCAAACAACGT
AATGCTTATCTCAAATCTACTGACAATGTAGACATTAATTTCCTCTCAGTGTTAGATGAACAGCTTTCCGATTTTGGAAC
ACGAGTTATCGAACATAGACTAGAATTTATCAAGCAATTAGAGGAGGAGGCAGATAGACATCATAGTAACCTCTCAAATC
AGATAGAGCGCCTTAAAATCTCCTACGAATCTAATATCCCACTGGAAAATAACAAAGTTATTCGCGAATCATTTTTAACC
ACGTTAAAGCAAAATCACAAAAGAGATATCTTCAAAAAGAACACTGGTGTTGGTCCGCATAGGGATGATTTAACATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAGGGGCAGCAACGTAGTCTCATACTTTCTTTAAAAATGGCTGAGATTG
CTCTGATAAAAAAAGTAACAGGTGAATTTCCTATTCTTCTCCTCGATGATGTCATGAGTGAGCTTGACAATCACCGTCAA
CTTAAACTGTTAGAAAGTATTGACGAAGAGGTTCAAACCTTCATGACGACAACTTCACTTGATCATCTGAGTAACCTACC
ACCTGATTTAAAGACCTTCTTAGTTAAGAATGGTGATATTTATGAAAAACAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-343)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.084	97.814	0.637
recF	Bacillus subtilis subsp. subtilis str. 168	44.142	100	0.443