Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FNW43_RS16680 Genome accession   NZ_CP044410
Coordinates   3442111..3442848 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ecMN1F     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3437111..3447848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNW43_RS16665 (FNW43_16665) clpC 3437565..3440138 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  FNW43_RS16670 (FNW43_16670) yfiH 3440268..3440999 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  FNW43_RS16675 (FNW43_16675) rluD 3440996..3441976 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FNW43_RS16680 (FNW43_16680) comL 3442111..3442848 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FNW43_RS16685 (FNW43_16685) raiA 3443119..3443460 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FNW43_RS16690 (FNW43_16690) pheL 3443564..3443611 (+) 48 WP_010723158.1 phe operon leader peptide -
  FNW43_RS16695 (FNW43_16695) pheA 3443710..3444870 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  FNW43_RS16700 (FNW43_16700) tyrA 3444913..3446034 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FNW43_RS16705 (FNW43_16705) aroF 3446045..3447115 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FNW43_RS16710 (FNW43_16710) yfiL 3447325..3447690 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=342486 FNW43_RS16680 WP_000197686.1 3442111..3442848(+) (comL) [Escherichia coli strain ecMN1F]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=342486 FNW43_RS16680 WP_000197686.1 3442111..3442848(+) (comL) [Escherichia coli strain ecMN1F]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment