Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   BACIH_RS14545 Genome accession   NZ_CP044360
Coordinates   2945812..2946627 (-) Length   271 a.a.
NCBI ID   WP_191973487.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain V167     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2940812..2951627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACIH_RS14510 (BACIH_2956) - 2941022..2941498 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  BACIH_RS14515 (BACIH_2957) - 2941498..2941782 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  BACIH_RS14520 (BACIH_2958) mnhG 2941766..2942140 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BACIH_RS14525 (BACIH_2959) - 2942180..2942563 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  BACIH_RS14530 (BACIH_2960) comA 2942585..2943229 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  BACIH_RS14535 (BACIH_2961) comP 2943310..2945610 (-) 2301 WP_077411086.1 histidine kinase Regulator
  BACIH_RS14540 (BACIH_2962) comX 2945624..2945797 (-) 174 WP_012118314.1 competence pheromone ComX -
  BACIH_RS14545 (BACIH_2963) comQ 2945812..2946627 (-) 816 WP_191973487.1 polyprenyl synthetase family protein Regulator
  BACIH_RS14550 (BACIH_2964) degQ 2946836..2946976 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BACIH_RS14560 (BACIH_2966) - 2947441..2947782 (+) 342 WP_012118316.1 hypothetical protein -
  BACIH_RS14565 (BACIH_2967) - 2947789..2949012 (-) 1224 WP_007408678.1 EAL and HDOD domain-containing protein -
  BACIH_RS14570 (BACIH_2968) - 2949142..2950608 (-) 1467 WP_014418767.1 nicotinate phosphoribosyltransferase -
  BACIH_RS14575 (BACIH_2969) - 2950626..2951177 (-) 552 WP_003152033.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 30777.43 Da        Isoelectric Point: 4.9000

>NTDB_id=342314 BACIH_RS14545 WP_191973487.1 2945812..2946627(-) (comQ) [Bacillus amyloliquefaciens strain V167]
MNKEVSKHVVNFADTKNNFPFAELALDHYLAFGGNDFEEILDLGTGIELLILAADIFDDIQDKDRPNAEWMKMDQAVSLN
IATLIYTIALQVISSRDPEGLLLKTALKYTVQAMEGQHIDLVDNTLTENQCIEMIKKKSGALTALASMLGAVLATKRYQS
DVEQYAFYIGVAAQLKNDLFEIMYVNNTETFFKKTNLAIQFLEKKFNTVSTELLNNNFQQSELKRLLLDSGVIHYMSVMI
NVYNLKVKNGLENLNLTLENKNYLIEKNLRK

Nucleotide


Download         Length: 816 bp        

>NTDB_id=342314 BACIH_RS14545 WP_191973487.1 2945812..2946627(-) (comQ) [Bacillus amyloliquefaciens strain V167]
GTGAATAAAGAAGTAAGTAAACATGTTGTGAATTTTGCTGATACAAAAAACAACTTTCCATTTGCTGAGTTAGCTTTAGA
TCATTATTTGGCTTTTGGAGGGAATGATTTTGAAGAAATACTAGATTTAGGAACAGGGATTGAACTGCTTATCTTAGCGG
CTGATATTTTTGATGACATACAAGATAAGGATCGTCCAAATGCAGAATGGATGAAAATGGATCAGGCTGTATCTTTAAAT
ATTGCAACCTTAATTTATACAATAGCTCTCCAAGTTATATCATCTCGAGATCCGGAAGGATTATTACTCAAGACAGCTCT
AAAATATACAGTTCAAGCTATGGAAGGGCAACACATTGATTTGGTTGATAATACTTTAACTGAAAATCAATGCATTGAAA
TGATTAAGAAAAAGTCAGGGGCTTTGACAGCTTTAGCAAGTATGCTGGGTGCTGTACTTGCAACTAAACGTTATCAATCA
GATGTGGAGCAGTATGCTTTCTATATAGGGGTTGCAGCTCAATTAAAAAATGATTTATTTGAGATAATGTATGTGAATAA
TACGGAAACCTTTTTCAAAAAGACAAATTTGGCAATTCAGTTCTTAGAGAAAAAATTCAACACAGTATCCACAGAATTGT
TAAACAACAACTTTCAACAATCAGAGTTAAAACGGCTTCTCTTAGACTCTGGTGTTATCCATTATATGTCAGTGATGATT
AATGTATATAATTTGAAAGTGAAAAATGGACTCGAAAATTTAAATTTGACTTTAGAGAACAAAAACTATTTAATTGAAAA
AAATTTGCGAAAATGA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(14-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

36

100

0.365