Detailed information NTG0342303

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: BACIH_RS12740
• Genome accession: NZ_CP044360
• Coordinates: 2597679..2598941 (-)
• Length: 420 a.a.
• NCBI ID: WP_007408149.1
• Uniprot ID: A7Z7B2
• Organism: Bacillus amyloliquefaciens strain V167
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2592679..2603941

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BACIH_RS12725 (BACIH_2600)	yihA	2592763..2593350 (-)	588	WP_003152626.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
BACIH_RS12730 (BACIH_2601)	lon	2593347..2595671 (-)	2325	WP_007612896.1	endopeptidase La	-
BACIH_RS12735 (BACIH_2602)	lonB	2595871..2597529 (-)	1659	WP_012118116.1	ATP-dependent protease LonB	-
BACIH_RS12740 (BACIH_2603)	clpX	2597679..2598941 (-)	1263	WP_007408149.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
BACIH_RS12745 (BACIH_2604)	tig	2599213..2600487 (-)	1275	WP_003152618.1	trigger factor	-
BACIH_RS12750 (BACIH_2605)	ddcA	2600704..2601708 (-)	1005	WP_012118117.1	DNA damage checkpoint antagonist DdcA	-
BACIH_RS12755 (BACIH_2607)	leuD	2601826..2602425 (-)	600	WP_007408146.1	3-isopropylmalate dehydratase small subunit	-
BACIH_RS12760 (BACIH_2608)	leuC	2602441..2603859 (-)	1419	WP_007408145.1	3-isopropylmalate dehydratase large subunit	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 46247.01 Da
• Isoelectric Point: 4.4911

>NTDB_id=342303 BACIH_RS12740 WP_007408149.1 2597679..2598941(-) (clpX) [Bacillus amyloliquefaciens strain V167]
MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQ
AKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEQIIKRRLGQKVIGFGSDNKAADLEKEELLSKVLPEDLLRFGLIPEFIGRLPVIASLEQLDETALVEIL
TKPKNALVKQYKKMLELDDVELEFEDEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADG
EAPRLVLKDGTVVGQDKTSA

Nucleotide

• Length: 1263 bp

>NTDB_id=342303 BACIH_RS12740 WP_007408149.1 2597679..2598941(-) (clpX) [Bacillus amyloliquefaciens strain V167]
ATGTTTAAATTCAACGAGGAAAAAGGACAATTGAAATGCTCGTTCTGCGGAAAAACGCAAGATCAGGTTCGTAAGCTGGT
TGCAGGACCGGGTGTATATATATGCGACGAATGTATTGAGCTCTGTACAGAAATCGTAGAGGAAGAGCTCGGTACAGAAG
AAGAAGTCGAATTTAAAGACGTTCCGAAGCCGCAGGAAATCCGTGAGATTCTGAATGAATATGTCATCGGACAGGATCAG
GCGAAGAAATCACTTGCGGTTGCGGTATACAACCATTACAAACGCATCAACTCCAACAGTAAAGTGGATGATGTCGAGCT
TTCTAAAAGTAATATTTCTTTAATCGGACCGACTGGAAGCGGGAAAACACTTCTTGCCCAGACGCTTGCGCGTATTCTGA
ACGTGCCGTTTGCGATCGCGGACGCTACATCTCTGACTGAAGCCGGATATGTCGGTGAGGACGTAGAAAACATCCTCCTC
AAGCTGATTCAGGCAGCAGACTATGATGTGGAAAAAGCAGAAAAAGGCATTATTTATATCGATGAAATCGATAAAGTAGC
GCGAAAATCTGAAAACCCATCCATTACACGCGACGTATCAGGCGAAGGCGTTCAGCAGGCGTTGCTGAAAATTCTTGAAG
GAACGGTTGCAAGCGTGCCGCCTCAAGGAGGACGCAAACATCCTCATCAGGAATTCATCCAGATCGATACGACGAATATT
CTGTTCATTTGCGGCGGTGCATTTGACGGCATTGAACAAATTATCAAACGCCGTCTCGGACAAAAAGTCATCGGTTTCGG
CTCAGATAATAAAGCGGCAGACCTTGAAAAAGAAGAACTGCTTTCTAAAGTTCTTCCGGAAGACTTGCTCCGTTTCGGTC
TGATTCCTGAATTCATCGGCCGTCTTCCTGTCATTGCAAGCCTTGAGCAGCTTGACGAAACGGCACTGGTTGAAATTCTG
ACTAAACCGAAAAACGCACTCGTCAAACAATACAAGAAAATGTTAGAACTTGATGATGTCGAGCTTGAATTTGAAGACGA
GGCATTATCTGAAATTGCGAAAAAAGCGATCGAGCGTAAAACAGGCGCACGCGGCCTGCGTTCTATCATTGAAGGCATCA
TGCTTGACGTCATGTTTGATCTGCCGTCCCGCGATGATATTGAAAAATGTGTCATTACCGGAGCGACAGTCGCAGACGGT
GAAGCACCGCGTCTTGTATTAAAAGACGGCACAGTTGTCGGCCAAGATAAAACATCAGCATAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (109-305)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

3D structure

• AlphaFold DB: A7Z7B2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	68.262	94.524	0.645
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.158	96.19	0.569