Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   SALIVB_RS07665 Genome accession   NC_015760
Coordinates   1690345..1692330 (-) Length   661 a.a.
NCBI ID   WP_013991006.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1685345..1697330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS07635 (SALIVB_1594) rsmI 1686563..1687429 (-) 867 WP_013991002.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  SALIVB_RS07640 (SALIVB_1595) yabA 1687432..1687752 (-) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  SALIVB_RS07645 (SALIVB_1596) yaaT 1687739..1688545 (-) 807 WP_013991003.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  SALIVB_RS07650 (SALIVB_1597) - 1688542..1689417 (-) 876 WP_013991004.1 DNA polymerase III subunit delta' -
  SALIVB_RS07655 (SALIVB_1598) tmk 1689426..1690055 (-) 630 WP_013991005.1 dTMP kinase -
  SALIVB_RS07665 (SALIVB_1600) recP/tkt 1690345..1692330 (-) 1986 WP_013991006.1 transketolase Machinery gene
  SALIVB_RS07670 (SALIVB_1601) tpiA 1692596..1693354 (-) 759 WP_002885895.1 triose-phosphate isomerase -
  SALIVB_RS07675 (SALIVB_1602) tuf 1693609..1694805 (-) 1197 WP_002890213.1 elongation factor Tu -
  SALIVB_RS07680 (SALIVB_1603) ftsW 1695042..1696322 (-) 1281 WP_013991007.1 cell division peptidoglycan polymerase FtsW -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70817.47 Da        Isoelectric Point: 4.7666

>NTDB_id=34227 SALIVB_RS07665 WP_013991006.1 1690345..1692330(-) (recP/tkt) [Streptococcus salivarius CCHSS3]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVTMDDLKNFRQWGSKTPGHPEVNHTDGIEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKGVYGYDAPAFTVPDEVARRFEVGIKFRGEAAENAWQTKFAEYE
AAYPELAAEYKAAFANEPAHVDLNAHEVGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQPDNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLDGTAENAEAGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=34227 SALIVB_RS07665 WP_013991006.1 1690345..1692330(-) (recP/tkt) [Streptococcus salivarius CCHSS3]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCAATTCAAGCCGCGAATTC
TGGGCACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCTTATGTGCTTTGGAACCATGTGATGAATGTTAATCCAAAGA
CAAGCCGTAACTGGACAAACCGTGACCGTTTTGTTCTTTCTGCAGGTCATGGTTCTGCCTTACTTTATAGTCTCTTGCAC
CTTTCTGGCTACGACGTGACAATGGACGACTTGAAGAACTTCCGTCAATGGGGATCTAAGACTCCAGGTCACCCTGAAGT
TAACCATACAGATGGTATTGAAGCAACATCAGGTCCTCTTGGTCAAGGAATTGCTAATGCTGTAGGTATGGCAATGGCTG
AAGCACACTTGGCAGCTAAATTTAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCCCTCCATGGCGATGGA
TGTTTGATGGAAGGTGTTTCTCAAGAAGCTGCTAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTACTTCTTTACGA
TTCAAATGATATCTCACTTGATGGGCCAACTTCAATGGCTTTCACTGAAGATGTTAAGGCTAAGTTTGAAGCTTATGGTT
GGCAACACATTCTTGTCAAAGATGGTAATGATTTGGAAGCTATTGCTAAAGCAATCGAAGAAGCTAAAGCTGAGACAGAT
AAACCATCTATTATCGAAGTTAAGACAATCATTGGTTACGGAGCTGAAGGACAAGGAACATCAGCTGTCCACGGTGCTCC
AATTGGTCAAGACGGCATTGATCACGCAAAAGGTGTTTACGGTTACGATGCACCAGCATTTACAGTTCCAGATGAAGTCG
CACGTCGTTTCGAAGTTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
GCTGCTTACCCAGAATTGGCTGCGGAATACAAGGCTGCCTTTGCGAATGAACCTGCACACGTTGACTTGAATGCTCATGA
AGTGGGTTCAGCAGTAGCTAGCCGTGTGTCAAGCCAACAAGCAATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GAGGTTCAGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAACCAGACAACTATGCTGGA
CGTAATATTTGGTTCGGTGTACGTGAGTTTGCTATGGCTGCAGCGATGAATGGTATTGCTCTTCATGGTGGTACTCGCGT
TTATGGTGGTACTTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCACTTCAAAACTTGCCAGTAA
CTTATGTTATGACTCACGACTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCTTGGAAACGTGCCTTGGCTGA
GACTGAACGTCCAACAATGCTAGTTTTGACACGTCAAAACTTGCCAGTCCTTGATGGTACAGCTGAAAATGCTGAAGCTG
GTGTCAATAAAGGGGCTTACATTATCTCAGAAGCTAAAGGTGATCTTGATGGTATCATCATTGCGACTGGTTCTGAAGTG
AAATTGGCTCTTGATACTCAAGCGGCTCTTGAAGCTGAAGGCGTGCATGTCCGTGTTGTTTCAATGCCATCACAAAATCT
CTTTGATGAACAAGATGCTGCATATAAAGAAGAAGTTCTTCCAGCAGCTGTGACAAAACGTTTGGCTATCGAAGCTGGAA
CTAGCTTTGGTTGGGGCAAATACGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGTGCCTCAGCACCTGGT
GACCGTATCTTTAAAGAATATGGTTTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.535

99.546

0.563

Multiple sequence alignment