Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   BACIH_RS08380 Genome accession   NZ_CP044360
Coordinates   1639702..1640133 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain V167     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1634702..1645133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACIH_RS08360 (BACIH_1700) spoVS 1635272..1635532 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  BACIH_RS08365 (BACIH_1701) tdh 1635790..1636836 (+) 1047 WP_041482192.1 L-threonine 3-dehydrogenase -
  BACIH_RS08370 (BACIH_1702) - 1636849..1638027 (+) 1179 WP_098081411.1 glycine C-acetyltransferase -
  BACIH_RS08375 (BACIH_1703) miaB 1638170..1639699 (+) 1530 WP_012117585.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BACIH_RS08380 (BACIH_1704) ymcA 1639702..1640133 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  BACIH_RS08385 (BACIH_1705) cotE 1640386..1640931 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  BACIH_RS08390 (BACIH_1706) hexA 1641050..1643629 (+) 2580 WP_150978908.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=342268 BACIH_RS08380 WP_003154113.1 1639702..1640133(+) (ymcA) [Bacillus amyloliquefaciens strain V167]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=342268 BACIH_RS08380 WP_003154113.1 1639702..1640133(+) (ymcA) [Bacillus amyloliquefaciens strain V167]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916

Multiple sequence alignment