Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   ETT50_RS09480 Genome accession   NZ_CP035449
Coordinates   53884..53982 (+) Length   32 a.a.
NCBI ID   WP_020833188.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm56     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 48884..58982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT50_RS00320 (ETT50_00320) purK 48946..50019 (+) 1074 WP_032464761.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ETT50_RS00325 (ETT50_00325) - 50021..51439 (+) 1419 WP_011888524.1 hypothetical protein -
  ETT50_RS00330 (ETT50_00330) purB 51459..52751 (+) 1293 WP_030126529.1 adenylosuccinate lyase -
  ETT50_RS00335 (ETT50_00335) comR 52882..53793 (+) 912 WP_032464762.1 XRE family transcriptional regulator Regulator
  ETT50_RS09480 comS 53884..53982 (+) 99 WP_020833188.1 quorum-sensing system DWW-type pheromone Regulator
  ETT50_RS00340 (ETT50_00340) ruvB 54013..55011 (+) 999 WP_014407198.1 Holliday junction branch migration DNA helicase RuvB -
  ETT50_RS00345 (ETT50_00345) - 55149..55586 (+) 438 WP_014635221.1 low molecular weight protein-tyrosine-phosphatase -
  ETT50_RS00350 (ETT50_00350) - 55609..56010 (+) 402 WP_002986671.1 MORN repeat-containing protein -
  ETT50_RS00355 (ETT50_00355) - 56007..57782 (+) 1776 WP_032464763.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3758.63 Da        Isoelectric Point: 10.7919

>NTDB_id=342214 ETT50_RS09480 WP_020833188.1 53884..53982(+) (comS) [Streptococcus pyogenes strain emm56]
MLKKVKPFLLLAAVVAFKVARVMHEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=342214 ETT50_RS09480 WP_020833188.1 53884..53982(+) (comS) [Streptococcus pyogenes strain emm56]
ATGTTAAAAAAAGTTAAGCCATTTTTACTATTAGCCGCAGTAGTTGCATTTAAAGTTGCTCGTGTAATGCATGAATTTGA
TTGGTGGAATCTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

100

100

1
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437

Multiple sequence alignment