Detailed information NTG0342148

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: F7G16_RS01875
• Genome accession: NZ_CP044352
• Coordinates: 446906..449383 (+)
• Length: 825 a.a.
• NCBI ID: WP_038231910.1
• Uniprot ID: -
• Organism: Xylella fastidiosa strain ATCC 35879
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 441906..454383

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F7G16_RS01850 (F7G16_01935)	-	443019..443804 (+)	786	WP_004089282.1	succinate dehydrogenase iron-sulfur subunit	-
F7G16_RS01855 (F7G16_01940)	-	443925..444173 (+)	249	WP_004089280.1	succinate dehydrogenase assembly factor 2	-
F7G16_RS01860 (F7G16_01945)	-	444196..444576 (+)	381	WP_011097604.1	hypothetical protein	-
F7G16_RS01865 (F7G16_01950)	-	444602..445843 (+)	1242	WP_004089276.1	lipoprotein-releasing ABC transporter permease subunit	-
F7G16_RS01870 (F7G16_01955)	lolD	445836..446558 (+)	723	WP_004089270.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
F7G16_RS01875 (F7G16_01960)	comA	446906..449383 (+)	2478	WP_038231910.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
F7G16_RS01880 (F7G16_01965)	exbB	449368..450030 (+)	663	WP_004085189.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
F7G16_RS01885 (F7G16_01970)	-	450035..450472 (+)	438	WP_004089267.1	biopolymer transporter ExbD	-
F7G16_RS01890 (F7G16_01975)	msbA	450490..452238 (+)	1749	WP_004089264.1	lipid A export permease/ATP-binding protein MsbA	-
F7G16_RS01895 (F7G16_01980)	lpxK	452235..453254 (+)	1020	WP_004089261.1	tetraacyldisaccharide 4'-kinase	-
F7G16_RS01900 (F7G16_01985)	-	453661..454362 (-)	702	WP_228446162.1	contractile injection system protein, VgrG/Pvc8 family	-

Sequence

Protein

• Length: 825 a.a.
• Molecular weight: 90793.88 Da
• Isoelectric Point: 9.4516

>NTDB_id=342148 F7G16_RS01875 WP_038231910.1 446906..449383(+) (comA) [Xylella fastidiosa strain ATCC 35879]
MDDMKPEQRHMLQRCWVDVLSVIRHAACLRYLAFPALLPSAVALLLGCLAALTLPRLPPVWVLWIFLFVGVMLAVVVRRV
AWCGVVLFGFANCCLHGQFGLRHQLSFALEGRDLVLRGRIVSLPVPETRRTRFLLRVDTDQDQEPALRGRLLQLSWYDEN
KAVVPGPRSALHAGSVWQLHVRLRAPHSLMNPGGFDSERYALAQGIVATGYVRMPTMARELAAATGINAWRERMSARIAD
AVLLEASVYLRALALGDTRGLSQQDWEVLRATGLTHLIAISGFHVGMVAGACALLVSLLWRVFPHLAWRWPRPIAMALIA
VPAAAGYTVLAGASLPTVRTALMIGIVALARLTRRRAMPGHVLGLALLVVLVWDPLAILSAGFWLSFAGVAWLMWCMQDG
HAASCRGFLSAQGVATLGLLPFTVALFGQVSFVGPLANLIAIPLWTFVVVPLALLGTALEALVPGWGSPMWRLGGNFFQW
SWQLFEYLAQTDFALWWLPESDGVALGLALLGAFWLLLPRGTPGKWLALLLWLPLLWPERERPRPGEFEMQMLDVGQGLS
IVVRTSGHTLLYDAGPAVNDGFDAGERVVVPALRASGIRRLDALVASHADSDHVGGLPAVLKAYPVDISYAPPDAPLDVE
RRCSAGDSWLWDGVQFRFLHPAPHSRYLGNESSCVLRIDTRWGSALLTGDIGKVVERGLLSQDRESVRADVVVVPHHGSA
GSSSLGFVRAVNARLALVSSGDGNRFGHPRCSVVESWSETADVLLTAHSGAVRIWVGQQGLQLRERRVWRRRFWDAVERR
RSAAILSATEDVSKERRRNETCWNW

Nucleotide

• Length: 2478 bp

>NTDB_id=342148 F7G16_RS01875 WP_038231910.1 446906..449383(+) (comA) [Xylella fastidiosa strain ATCC 35879]
ATGGACGATATGAAACCTGAGCAGCGACACATGTTGCAGCGATGTTGGGTTGACGTGTTAAGTGTGATCCGGCACGCAGC
GTGCCTGCGTTACCTCGCGTTTCCGGCGTTGTTGCCGAGTGCTGTTGCGTTGCTGCTGGGTTGTCTTGCTGCACTCACCT
TGCCGCGATTACCGCCCGTATGGGTGTTGTGGATTTTTCTGTTTGTCGGAGTAATGCTCGCTGTTGTCGTGCGCCGTGTT
GCTTGGTGCGGTGTGGTGTTGTTTGGTTTTGCTAACTGTTGCTTGCATGGTCAGTTTGGTTTGCGACATCAATTGTCGTT
CGCGTTGGAGGGCCGTGATCTGGTGTTACGTGGTCGGATCGTTTCTTTGCCGGTTCCAGAGACCAGGCGTACACGTTTCT
TGTTGCGTGTTGATACCGATCAAGATCAGGAACCAGCGCTGCGTGGTCGACTGCTGCAGTTATCCTGGTATGACGAGAAT
AAGGCGGTAGTACCGGGGCCACGCAGTGCATTGCATGCTGGATCTGTATGGCAGCTGCACGTGCGTCTGCGTGCGCCGCA
CAGTTTGATGAATCCCGGAGGTTTCGACAGCGAGCGTTATGCCCTAGCCCAGGGGATTGTTGCGACCGGTTACGTACGTA
TGCCGACGATGGCACGTGAGCTTGCGGCAGCCACTGGCATCAATGCTTGGCGGGAACGGATGTCTGCGCGTATTGCTGAT
GCGGTGTTGTTGGAAGCGTCGGTGTATTTACGTGCGTTGGCCTTGGGTGATACCCGGGGTTTGTCTCAACAGGATTGGGA
AGTATTGCGCGCTACAGGGCTGACGCATTTGATTGCGATCTCGGGGTTCCATGTCGGTATGGTCGCTGGTGCCTGTGCGT
TGCTTGTGTCGTTGCTGTGGCGAGTTTTCCCACATTTGGCTTGGCGTTGGCCGCGGCCAATCGCTATGGCACTCATTGCG
GTACCGGCCGCAGCCGGCTACACCGTCCTGGCTGGGGCGTCACTGCCCACAGTGAGAACCGCTTTGATGATCGGCATCGT
CGCATTGGCGCGCCTCACTCGGCGTCGTGCCATGCCGGGTCATGTCCTGGGGCTTGCCTTGCTTGTCGTACTTGTTTGGG
ATCCATTAGCCATTCTTAGTGCTGGCTTCTGGCTCAGCTTTGCCGGTGTCGCTTGGTTAATGTGGTGTATGCAAGACGGT
CATGCCGCGTCTTGTCGTGGCTTCTTATCGGCACAAGGTGTTGCAACCCTTGGGTTATTACCATTCACCGTGGCTTTATT
TGGTCAGGTTTCGTTTGTTGGGCCTTTGGCTAACTTGATTGCGATTCCGTTATGGACCTTTGTCGTTGTACCGCTGGCGT
TGTTAGGGACTGCGCTGGAAGCGTTAGTGCCAGGGTGGGGTAGCCCCATGTGGCGTTTGGGGGGGAATTTTTTCCAATGG
AGTTGGCAGCTATTCGAATACTTGGCACAGACTGATTTCGCATTGTGGTGGTTGCCGGAATCTGATGGTGTTGCATTGGG
GTTGGCCTTGCTGGGAGCGTTTTGGTTGCTGTTACCACGCGGTACGCCTGGTAAGTGGTTGGCGCTGTTGCTGTGGTTGC
CTTTGTTGTGGCCTGAGCGTGAGCGTCCCCGCCCCGGGGAGTTTGAGATGCAGATGCTGGACGTGGGGCAAGGACTGTCG
ATTGTGGTGCGTACTTCAGGCCATACGTTGTTGTACGACGCAGGTCCAGCAGTGAATGATGGTTTCGATGCCGGTGAGCG
TGTTGTGGTGCCGGCATTACGTGCCAGTGGCATCCGTCGCTTGGATGCATTGGTGGCTAGTCATGCTGATAGTGATCACG
TCGGAGGTTTGCCCGCGGTCCTGAAGGCTTATCCGGTTGATATCAGCTACGCTCCTCCGGATGCTCCACTCGACGTTGAG
CGCCGTTGCAGTGCTGGGGACAGTTGGCTGTGGGATGGAGTCCAGTTTCGTTTCTTACATCCTGCACCGCATTCGAGGTA
TTTAGGTAACGAGTCCAGTTGTGTATTGCGTATCGACACGCGCTGGGGCAGTGCTTTGTTGACGGGTGACATCGGCAAAG
TGGTCGAACGTGGTTTATTGAGTCAGGATCGTGAGAGTGTACGTGCCGATGTGGTGGTCGTACCGCATCATGGGAGCGCC
GGTTCTTCCTCGCTTGGGTTTGTCCGTGCGGTTAATGCGCGGTTAGCTTTGGTATCCAGTGGTGATGGTAACCGCTTCGG
TCATCCGCGCTGTTCGGTGGTGGAGAGCTGGAGTGAAACGGCAGATGTGTTGCTTACTGCGCATAGCGGCGCAGTACGGA
TTTGGGTTGGACAGCAGGGTCTGCAGTTACGTGAACGCCGTGTTTGGCGTCGTCGATTCTGGGATGCGGTCGAACGTCGC
CGATCCGCTGCTATCCTATCCGCCACTGAAGATGTATCCAAAGAGCGTCGGAGAAACGAGACATGCTGGAACTGGTAA

Domains

Predicted by InterProScan.

• Competence protein (Competence) (253-520)

• Domain of unknown function (DUF4131) (DUF4131) (59-215)

• Metallo-beta-lactamase superfamily (Lactamase_B) (554-722)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Ralstonia pseudosolanacearum GMI1000	37.108	100	0.373