Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SALIVB_RS05545 Genome accession   NC_015760
Coordinates   1245777..1246589 (-) Length   270 a.a.
NCBI ID   WP_013990680.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1240777..1251589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS05520 (SALIVB_1139) - 1240997..1241863 (-) 867 WP_004182606.1 GNAT family N-acetyltransferase -
  SALIVB_RS05525 (SALIVB_1140) yidA 1242042..1242848 (+) 807 WP_004182607.1 sugar-phosphatase -
  SALIVB_RS05530 (SALIVB_1141) - 1242848..1244062 (+) 1215 WP_004182608.1 aminoacyltransferase -
  SALIVB_RS05535 (SALIVB_1142) tnpA 1244201..1244674 (-) 474 WP_013990678.1 IS200/IS605 family transposase -
  SALIVB_RS10555 - 1244911..1245187 (-) 277 Protein_1051 ISL3 family transposase -
  SALIVB_RS05540 (SALIVB_1144) - 1245359..1245718 (-) 360 WP_013990679.1 YbaN family protein -
  SALIVB_RS05545 (SALIVB_1145) vicX 1245777..1246589 (-) 813 WP_013990680.1 MBL fold metallo-hydrolase Regulator
  SALIVB_RS05550 (SALIVB_1146) vicK 1246595..1247935 (-) 1341 WP_013990681.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SALIVB_RS05555 (SALIVB_1147) yycF 1247928..1248635 (-) 708 WP_002884978.1 response regulator YycF -
  SALIVB_RS05560 (SALIVB_1148) - 1248920..1249687 (+) 768 WP_002885036.1 amino acid ABC transporter ATP-binding protein -
  SALIVB_RS05565 (SALIVB_1149) - 1249697..1250530 (+) 834 WP_013990682.1 transporter substrate-binding domain-containing protein -
  SALIVB_RS05570 (SALIVB_1150) - 1250548..1251246 (+) 699 WP_002886251.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30108.96 Da        Isoelectric Point: 5.3499

>NTDB_id=34209 SALIVB_RS05545 WP_013990680.1 1245777..1246589(-) (vicX) [Streptococcus salivarius CCHSS3]
MTSDLGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKIDNSQKHVFSRDKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GIIENADGYLIESNHDVEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAHMTME
NQLARADFGVGTDFKVYDTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=34209 SALIVB_RS05545 WP_013990680.1 1245777..1246589(-) (vicX) [Streptococcus salivarius CCHSS3]
ATGACCTCAGATTTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACTGGTAATTCCTTTTATTTGGAAACTCCAGA
GAAGAAGATTCTTGTAGATGCTGGTTTGTCTGGTAAGAAAATCACAAGTTTGCTAGCTGAGATTGATCGTGATCCGAGTG
ATTTGGATGCTATCTTAGTAACGCATGAACACAAGGATCACATCCATGGTGTAGGCGTTTTAGCTCGTAAATATGGTATG
GATATCTACGCCAACGAGAAAACCTGGCAGATTATGGATAGTAAAAATATGCTTGGCAAGATTGATAATAGCCAGAAACA
TGTTTTTTCTCGTGATAAGCTTCTGACCTTTGGAGACATTGATATTGAGTCTTTTGGAGTTAGTCACGACGCTATTGATC
CACAGTTCTATCGCTTTATGAAAGATGGAAAGAGTTTCGTCATGTTGACGGATACGGGTTACGTTTCTGATCGTATGGCA
GGTATTATTGAGAATGCCGATGGCTATCTGATTGAGTCCAATCATGATGTTGAAATCCTTAGAGCAGGTTCATATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAAGGTCACTTGTGTAATGAAGATGGAGCGGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATCTACTTGGGTCACCTTTCCAAAGAAAATAATATCAAGGAGTTGGCCCACATGACGATGGAA
AATCAGTTGGCACGTGCTGACTTTGGTGTTGGAACAGACTTCAAGGTTTATGATACCTCACCAGATACAGCGACTCCACT
GACAGATATTTAA

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.239

99.259

0.767

Multiple sequence alignment