Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ETT57_RS01445 Genome accession   NZ_CP035442
Coordinates   259819..260745 (+) Length   308 a.a.
NCBI ID   WP_136048813.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm25     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 254819..265745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT57_RS01435 (ETT57_01435) amiA 256273..258252 (+) 1980 WP_136020940.1 peptide ABC transporter substrate-binding protein Regulator
  ETT57_RS01440 (ETT57_01440) amiC 258317..259819 (+) 1503 WP_002992227.1 ABC transporter permease Regulator
  ETT57_RS01445 (ETT57_01445) amiD 259819..260745 (+) 927 WP_136048813.1 oligopeptide ABC transporter permease OppC Regulator
  ETT57_RS01450 (ETT57_01450) amiE 260754..261824 (+) 1071 WP_002992231.1 ABC transporter ATP-binding protein Regulator
  ETT57_RS01455 (ETT57_01455) amiF 261817..262740 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  ETT57_RS09690 (ETT57_01460) - 262778..262867 (-) 90 WP_109821088.1 IS3 family transposase -
  ETT57_RS09385 - 262888..263067 (-) 180 WP_014635282.1 hypothetical protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34836.77 Da        Isoelectric Point: 8.5670

>NTDB_id=341794 ETT57_RS01445 WP_136048813.1 259819..260745(+) (amiD) [Streptococcus pyogenes strain emm25]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLATTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=341794 ETT57_RS01445 WP_136048813.1 259819..260745(+) (amiD) [Streptococcus pyogenes strain emm25]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCCATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTAGCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCTAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.377

100

0.734
  amiD Streptococcus thermophilus LMG 18311

72.727

100

0.727
  amiD Streptococcus thermophilus LMD-9

72.727

100

0.727

Multiple sequence alignment