Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SALIVB_RS01840 Genome accession   NC_015760
Coordinates   347728..348390 (+) Length   220 a.a.
NCBI ID   WP_013990091.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342728..353390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS01815 (SALIVB_0361) - 343029..343739 (+) 711 WP_013990087.1 ABC transporter ATP-binding protein -
  SALIVB_RS01820 (SALIVB_0362) - 343874..344533 (+) 660 WP_013990088.1 CBS and ACT domain-containing protein -
  SALIVB_RS01825 (SALIVB_0363) cysK 344719..345645 (-) 927 WP_002883742.1 cysteine synthase A -
  SALIVB_RS01830 (SALIVB_0364) - 345747..346373 (-) 627 WP_013990089.1 YigZ family protein -
  SALIVB_RS01835 (SALIVB_0365) comFA/cflA 346428..347747 (+) 1320 WP_013990090.1 DEAD/DEAH box helicase Machinery gene
  SALIVB_RS01840 (SALIVB_0366) comFC/cflB 347728..348390 (+) 663 WP_013990091.1 ComF family protein Machinery gene
  SALIVB_RS01845 (SALIVB_0367) hpf 348469..349017 (+) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26029.30 Da        Isoelectric Point: 8.6075

>NTDB_id=34172 SALIVB_RS01840 WP_013990091.1 347728..348390(+) (comFC/cflB) [Streptococcus salivarius CCHSS3]
MKCLLCNDWIESVPKLRDLITFNQREEYSCVSCKNQFKKLSKERCQNCNKELHRETCIDCELWMKKGYIPKHLAIYRYKE
NMKDYFSRYKFMGDYCLRKLFQQDIKNNLKPFLTKGFTIVPVPLSEERLAERGFNQVEGLIEGIPYQDIFEKRDIEKQSS
KTRKERLSQDNAFCLKKGIDVPDKIIIVDDIYTTGSTLYQMVQLLEGIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=34172 SALIVB_RS01840 WP_013990091.1 347728..348390(+) (comFC/cflB) [Streptococcus salivarius CCHSS3]
ATGAAGTGTCTACTATGTAATGACTGGATTGAATCAGTGCCAAAATTAAGAGACCTGATTACGTTTAACCAGAGAGAAGA
GTACTCCTGCGTATCTTGTAAAAATCAGTTTAAAAAACTTTCAAAAGAAAGATGTCAAAATTGTAATAAGGAGTTACATA
GAGAGACCTGTATTGATTGTGAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCCATTTATCGCTATAAAGAA
AACATGAAAGATTATTTTAGCCGATATAAATTTATGGGAGACTATTGTCTTAGAAAATTATTTCAACAAGATATAAAAAA
TAACTTAAAACCATTTTTGACGAAAGGTTTTACCATAGTGCCGGTCCCATTATCGGAAGAACGCTTGGCAGAAAGAGGAT
TTAACCAAGTTGAGGGATTGATAGAGGGAATTCCCTATCAGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCATCG
AAAACACGCAAGGAGCGTTTAAGTCAAGATAATGCCTTCTGTCTCAAGAAAGGTATAGATGTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACAGGATCTACTTTATATCAGATGGTTCAACTATTAGAAGGTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(171-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus mitis SK321

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45

Multiple sequence alignment