Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   ETT60_RS09235 Genome accession   NZ_CP035439
Coordinates   53770..53868 (+) Length   32 a.a.
NCBI ID   WP_020833188.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm77     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 48770..58868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT60_RS00315 (ETT60_00315) purK 48829..49902 (+) 1074 WP_030126530.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ETT60_RS00320 (ETT60_00320) - 49904..51322 (+) 1419 WP_136114782.1 hypothetical protein -
  ETT60_RS00325 (ETT60_00325) purB 51342..52634 (+) 1293 WP_002986683.1 adenylosuccinate lyase -
  ETT60_RS00330 (ETT60_00330) comR 52768..53679 (+) 912 WP_014635220.1 XRE family transcriptional regulator Regulator
  ETT60_RS09235 comS 53770..53868 (+) 99 WP_020833188.1 quorum-sensing system DWW-type pheromone Regulator
  ETT60_RS00335 (ETT60_00335) ruvB 53899..54897 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  ETT60_RS00340 (ETT60_00340) - 55035..55472 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  ETT60_RS00345 (ETT60_00345) - 55495..55896 (+) 402 WP_002986671.1 MORN repeat-containing protein -
  ETT60_RS00350 (ETT60_00350) - 55893..57668 (+) 1776 WP_014407199.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3758.63 Da        Isoelectric Point: 10.7919

>NTDB_id=341670 ETT60_RS09235 WP_020833188.1 53770..53868(+) (comS) [Streptococcus pyogenes strain emm77]
MLKKVKPFLLLAAVVAFKVARVMHEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=341670 ETT60_RS09235 WP_020833188.1 53770..53868(+) (comS) [Streptococcus pyogenes strain emm77]
ATGTTAAAAAAAGTTAAGCCATTTTTACTATTAGCCGCAGTAGTTGCATTTAAAGTTGCTCGTGTAATGCATGAATTTGA
TTGGTGGAATCTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

100

100

1
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437

Multiple sequence alignment