Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   F5989_RS06260 Genome accession   NZ_CP044221
Coordinates   1275058..1275813 (-) Length   251 a.a.
NCBI ID   WP_002263137.1    Uniprot ID   Q8DWM0
Organism   Streptococcus mutans strain NCH105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1270058..1280813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5989_RS06240 (F5989_06360) purC 1271963..1272670 (-) 708 WP_002263133.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  F5989_RS06245 (F5989_06365) comA 1272793..1273374 (-) 582 WP_002263134.1 ATP-binding cassette domain-containing protein Regulator
  F5989_RS06250 (F5989_06370) - 1273602..1273850 (-) 249 WP_002263135.1 acyl carrier protein -
  F5989_RS06255 (F5989_06375) plsX 1273852..1274850 (-) 999 WP_002263136.1 phosphate acyltransferase PlsX -
  F5989_RS06260 (F5989_06380) recO 1275058..1275813 (-) 756 WP_002263137.1 DNA repair protein RecO Machinery gene
  F5989_RS06265 (F5989_06385) - 1275803..1276978 (-) 1176 WP_002273747.1 pyridoxal phosphate-dependent aminotransferase -
  F5989_RS06270 (F5989_06390) - 1277067..1278035 (-) 969 WP_002263139.1 ribose-phosphate diphosphokinase -
  F5989_RS06275 (F5989_06395) gbpB 1278160..1279455 (-) 1296 WP_002264119.1 glucan-binding protein GbpB -
  F5989_RS06280 (F5989_06400) mreD 1279565..1280071 (-) 507 WP_002263141.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29353.88 Da        Isoelectric Point: 6.6577

>NTDB_id=341616 F5989_RS06260 WP_002263137.1 1275058..1275813(-) (recO) [Streptococcus mutans strain NCH105]
MQTKETRGLVLYNRPFREDDKLVKIFTETSGKHMFFVRHATNSKLSSVIQPLILANFILKINNHGLSYIEDYKGVSLFKE
INADIYKLAYATYLVSLADAAISDAVYDAPLFAFLIKTLELMDEGLDYEILTNIFEIQILDRFGVQLNFHDCVFCHRVGL
AFDFSHRYSGLLCPEHYEKDLYRSHLDPNVPYLLNQFQTLHFDSLKTISVKPDMKQKLRKFIDEVYEDYIGLRLKSKKFI
DDLDHWGQVMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=341616 F5989_RS06260 WP_002263137.1 1275058..1275813(-) (recO) [Streptococcus mutans strain NCH105]
ATGCAGACTAAAGAAACAAGAGGTTTAGTGCTTTATAATCGGCCATTTAGAGAGGATGATAAGCTGGTTAAAATTTTTAC
GGAAACTTCCGGCAAACACATGTTTTTTGTGCGTCATGCTACTAATTCAAAATTGTCTTCTGTCATTCAACCATTGATTC
TAGCTAATTTTATTTTAAAAATTAATAATCATGGACTTTCTTATATTGAAGATTATAAGGGAGTCTCTCTTTTTAAGGAA
ATTAATGCAGATATTTATAAATTAGCTTATGCTACTTACCTTGTGTCTTTGGCTGATGCTGCTATTTCAGATGCTGTCTA
TGATGCCCCTCTTTTTGCTTTTTTAATTAAGACCCTAGAATTGATGGATGAAGGTCTTGATTATGAAATATTGACCAATA
TTTTTGAAATCCAAATTCTAGATCGCTTTGGCGTTCAACTTAATTTTCATGACTGTGTTTTTTGCCATCGTGTCGGTTTA
GCTTTTGATTTTTCACATCGCTATTCAGGTCTTTTGTGTCCTGAACATTATGAAAAAGATCTTTATCGTAGTCACTTAGA
TCCTAATGTCCCTTACCTTTTGAACCAATTTCAAACTTTACATTTTGATAGCTTAAAGACCATTTCAGTTAAACCTGACA
TGAAACAAAAGCTGAGAAAATTTATTGATGAAGTTTATGAGGACTATATTGGTCTTCGTCTCAAAAGTAAAAAATTTATT
GATGATTTAGATCACTGGGGACAAGTTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DWM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

65.339

100

0.653

Multiple sequence alignment