Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   F5989_RS03600 Genome accession   NZ_CP044221
Coordinates   751476..752075 (-) Length   199 a.a.
NCBI ID   WP_002289720.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCH105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 746476..757075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5989_RS03580 (F5989_03635) - 746744..748102 (-) 1359 WP_002267359.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  F5989_RS03585 (F5989_03640) - 748180..749130 (-) 951 WP_002289719.1 bile acid:sodium symporter family protein -
  F5989_RS03590 (F5989_03645) - 749483..750043 (+) 561 WP_002263248.1 folate family ECF transporter S component -
  F5989_RS03595 (F5989_03650) - 750215..751264 (-) 1050 WP_002265801.1 D-alanine--D-alanine ligase -
  F5989_RS03600 (F5989_03655) recR 751476..752075 (-) 600 WP_002289720.1 recombination mediator RecR Machinery gene
  F5989_RS03605 (F5989_03660) pbp2b 752088..754163 (-) 2076 WP_002281336.1 penicillin-binding protein PBP2B -
  F5989_RS03610 (F5989_03665) - 754409..755101 (-) 693 WP_002263252.1 phosphoglycerate mutase -
  F5989_RS03615 (F5989_03670) - 755321..756256 (+) 936 WP_002267357.1 dihydroorotate oxidase -
  F5989_RS03620 (F5989_03675) - 756319..756474 (-) 156 WP_002263254.1 hypothetical protein -
  F5989_RS03625 (F5989_03680) - 756537..757013 (-) 477 WP_002263255.1 Fur family transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21878.00 Da        Isoelectric Point: 4.7773

>NTDB_id=341587 F5989_RS03600 WP_002289720.1 751476..752075(-) (recR) [Streptococcus mutans strain NCH105]
MLYPTPIAKLIESFTKLPGIGIKTATRLAFYTIGMSDEDVNNFAKNLLAAKRELTYCFVCGNLTDDDPCNICTDESRNRS
TVLVVEDSKDVSAMEKIQEYHGLYHVLHGLISPMNGIGPDDINLKSLLTRLRDNSDIHEVIIATNATADGEATAMYISRV
LKPAGITVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 600 bp        

>NTDB_id=341587 F5989_RS03600 WP_002289720.1 751476..752075(-) (recR) [Streptococcus mutans strain NCH105]
ATGCTCTACCCAACGCCTATTGCCAAACTTATTGAGAGTTTCACAAAATTACCGGGTATTGGTATCAAAACAGCGACTCG
CTTAGCTTTTTATACGATTGGTATGAGTGATGAAGACGTTAATAACTTTGCTAAAAATCTTCTAGCTGCTAAACGAGAAT
TGACCTACTGTTTTGTTTGTGGCAATCTGACAGATGATGATCCTTGCAATATTTGTACAGATGAAAGCAGAAACCGCTCA
ACTGTTTTAGTAGTTGAAGATAGTAAGGATGTTTCTGCAATGGAAAAAATTCAGGAATATCATGGTCTTTATCATGTTTT
ACACGGCCTGATTTCTCCTATGAATGGTATTGGTCCTGATGATATTAATTTGAAAAGTCTTCTGACACGCCTACGTGATA
ATAGTGATATTCATGAAGTCATTATCGCAACTAATGCCACAGCAGATGGAGAAGCAACGGCTATGTATATTTCCAGAGTT
CTCAAACCTGCTGGTATTACAGTTACACGTTTAGCGCGTGGGCTTGCTGTTGGTTCTGACATTGAGTATGCTGATGAAGT
AACTCTGCTTCGAGCAATTGAAAACAGGACAGAGTTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-172)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

82.915

100

0.829
  recR Bacillus subtilis subsp. subtilis str. 168

62.814

100

0.628
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.469

98.492

0.477

Multiple sequence alignment