Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   F6X00_RS14625 Genome accession   NZ_CP044206
Coordinates   2988154..2988798 (-) Length   214 a.a.
NCBI ID   WP_011080857.1    Uniprot ID   A0A3Q0L732
Organism   Vibrio vulnificus strain Vv180806     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2983154..2993798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6X00_RS14615 (F6X00_14965) pgsA 2985716..2986273 (-) 558 WP_011080855.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  F6X00_RS14620 (F6X00_14970) uvrC 2986320..2988152 (-) 1833 WP_182290025.1 excinuclease ABC subunit UvrC -
  F6X00_RS14625 (F6X00_14975) letA 2988154..2988798 (-) 645 WP_011080857.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  F6X00_RS14630 (F6X00_14980) - 2989155..2991524 (+) 2370 WP_182290027.1 DNA polymerase II -
  F6X00_RS14635 (F6X00_14985) - 2991521..2993617 (-) 2097 WP_182290028.1 PTS sugar transporter subunit IIC/EAL domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23791.42 Da        Isoelectric Point: 6.4960

>NTDB_id=341545 F6X00_RS14625 WP_011080857.1 2988154..2988798(-) (letA) [Vibrio vulnificus strain Vv180806]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGENAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMMMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLSINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=341545 F6X00_RS14625 WP_011080857.1 2988154..2988798(-) (letA) [Vibrio vulnificus strain Vv180806]
TTGATCAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGATAGCGGTGAAAATGCGGTAAAATGGTGTCGTAGCAATCATGCAGACGTCGTTTTAATGG
ATATGAACATGCCTGGTATTGGCGGCTTGGAAGCTACCAAGAAAATTTTGCGTGTTAATCCAGATGTAAAAATCATCGTC
TTAACTGTTCATACGGAAAATCCGTTTCCAACTAAAGTGATGCAAGCGGGGGCTTCTGGTTATTTGACCAAAGGCGCTGG
CCCAGATGAAATGGTGAATGCAATTCGTATTGTCCATAGTGGGCAACGTTATATTTCACCAGAAATTGCGCAGCAAATGG
CGTTAAGCCAGTTTTCGCCTGCGTCCGAAAACCCTTTCAAGGATCTGTCTGAGCGTGAGCTTCAGATCATGATGATGATC
ACGAAAGGTCAGAAAGTGACAGATATTTCTGAGCAGTTAAATCTCAGTCCTAAAACTGTCAACAGCTATCGTTATCGTTT
GTTTAGCAAGCTATCGATTAATGGTGACGTAGAGTTGACCCATTTGGCGATTCGCCACGGAATGTTAGATACCGAGACTC
TCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L732

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.476

98.131

0.495
  letA Legionella pneumophila strain ERS1305867

50.476

98.131

0.495