Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PYCH_RS07555 Genome accession   NC_015680
Coordinates   1350250..1350612 (+) Length   120 a.a.
NCBI ID   WP_013906265.1    Uniprot ID   F8AGS3
Organism   Pyrococcus yayanosii CH1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1345250..1355612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYCH_RS07535 (PYCH_15390) - 1346299..1347378 (-) 1080 WP_013906261.1 hypothetical protein -
  PYCH_RS07540 (PYCH_15400) - 1347440..1347877 (-) 438 WP_013906262.1 chemotaxis protein CheW -
  PYCH_RS07545 (PYCH_15410) - 1347889..1349115 (-) 1227 WP_013906263.1 methyl-accepting chemotaxis protein -
  PYCH_RS07550 (PYCH_15420) - 1349421..1350272 (+) 852 WP_013906264.1 protein-glutamate O-methyltransferase CheR -
  PYCH_RS07555 (PYCH_15430) pilH 1350250..1350612 (+) 363 WP_013906265.1 response regulator Machinery gene
  PYCH_RS07560 (PYCH_15440) - 1350641..1351750 (+) 1110 WP_013906266.1 chemotaxis response regulator protein-glutamate methylesterase -
  PYCH_RS07565 (PYCH_15450) - 1351722..1354028 (+) 2307 WP_013906267.1 chemotaxis protein CheA -
  PYCH_RS07570 (PYCH_15460) - 1354021..1354650 (+) 630 WP_013906268.1 chemotaxis protein CheC -
  PYCH_RS07575 (PYCH_15470) - 1354647..1355258 (+) 612 WP_013906269.1 chemotaxis protein CheC -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13154.72 Da        Isoelectric Point: 9.4716

>NTDB_id=34150 PYCH_RS07555 WP_013906265.1 1350250..1350612(+) (pilH) [Pyrococcus yayanosii CH1]
MARILVVDDAAFMRMLLKKILTQAGHQVVGEASNGKEAVEKYKQLKPDLVTMDIVMPEMDGITAVKEIMKIDPNAKIIMI
TAVGQEAKVMEALKSGAKGYIVKPFQAPKVIEEVNRVLSS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=34150 PYCH_RS07555 WP_013906265.1 1350250..1350612(+) (pilH) [Pyrococcus yayanosii CH1]
ATGGCAAGAATATTGGTGGTTGATGATGCAGCTTTTATGAGAATGCTCCTAAAGAAGATACTGACCCAGGCCGGCCACCA
GGTGGTTGGAGAAGCCAGCAATGGAAAGGAAGCAGTTGAAAAATACAAACAACTTAAGCCAGACCTTGTGACGATGGACA
TAGTCATGCCAGAGATGGACGGCATAACGGCTGTCAAGGAGATCATGAAAATAGACCCAAACGCCAAGATAATCATGATA
ACTGCAGTCGGACAAGAGGCCAAAGTTATGGAGGCTCTAAAAAGCGGCGCCAAAGGCTATATAGTCAAGCCTTTCCAGGC
ACCCAAAGTCATTGAGGAAGTCAACAGGGTTCTCTCCTCTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F8AGS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.585

100

0.375
  vraR Staphylococcus aureus N315

37.931

96.667

0.367

Multiple sequence alignment