Detailed information NTG0341473

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: F6X00_RS00610
• Genome accession: NZ_CP044206
• Coordinates: 139644..142217 (-)
• Length: 857 a.a.
• NCBI ID: WP_182290252.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain Vv180806
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 134644..147217

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F6X00_RS00610 (F6X00_00620)	clpC	139644..142217 (-)	2574	WP_182290252.1	ATP-dependent chaperone ClpB	Regulator
F6X00_RS00615 (F6X00_00625)	pgeF	142335..143051 (-)	717	WP_182290254.1	peptidoglycan editing factor PgeF	-
F6X00_RS00620 (F6X00_00630)	rluD	143055..144032 (-)	978	WP_011078573.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
F6X00_RS00625 (F6X00_00635)	comL	144169..144894 (+)	726	WP_011078574.1	outer membrane protein assembly factor BamD	Machinery gene
F6X00_RS00630 (F6X00_00640)	-	145018..146355 (+)	1338	WP_103277047.1	IS4-like element ISVvu3 family transposase	-
F6X00_RS00635 (F6X00_00645)	hpf	146689..147012 (+)	324	WP_011078575.1	ribosome hibernation-promoting factor, HPF/YfiA family	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 96113.04 Da
• Isoelectric Point: 5.3514

>NTDB_id=341473 F6X00_RS00610 WP_182290252.1 139644..142217(-) (clpC) [Vibrio vulnificus strain Vv180806]
MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTILNVDVTHLRSKLSEMLDRLPKVSGIGGD
VQLSSAMGAMFNLCDKIAQKRQDAYISSEIFLLASIEDRGPLGQLFKELGLTEQKVSQAIEQIRGGQKVNDQNAEELRQA
LEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL
DMGALVAGAKYRGEFEERLKSVLNELSKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYVSDRQLPDKAIDLIDEAASS
IRMQIDSKPEALDKLERKIIQLKIEQQALSNEHDEASEKRLRSLNEELNEKEREFAELEEIWNAEKAALSGTQHIKAALE
QARMDMEFARRAGDLSRMSELQYGRIPELEKQLDLATQAEMQEMTLLKNKVTDNEIAEVLSKQTGIPVSKMLEAEKEKLL
RMEEVLHKRVIGQKEAVEVVSNAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLANFMFDSEDAMVRIDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSSRIQENFAMLDYQGIKEQVMEVVTKHFRPEFLNRVDETVVFHPLGQDHIKSIAAIQLKRLANRMEEHGYQLEVSDKAL
ELIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAGSVLPDKKIQLIVNNDQIVAHQ

Nucleotide

• Length: 2574 bp

>NTDB_id=341473 F6X00_RS00610 WP_182290252.1 139644..142217(-) (clpC) [Vibrio vulnificus strain Vv180806]
ATGCGTCTTGATCGATTTACCAGCAAATTTCAAATCGCTATCTCTGATGCACAATCATTGGCGTTAGGGCGCGATCATCA
ATACATTGAACCTGTTCACTTAATGGTGGCGCTGCTTGATCAAAACGGCAGCCCTATTCGTCCGCTGCTGACCATCTTAA
ATGTGGATGTCACTCACCTACGTTCAAAACTCAGCGAAATGCTGGATCGTTTGCCCAAAGTGAGCGGTATTGGTGGTGAT
GTACAGCTCTCCTCAGCCATGGGTGCGATGTTTAACCTGTGCGATAAAATTGCACAAAAACGCCAAGATGCTTACATCTC
ATCTGAAATCTTTTTGCTCGCATCAATCGAAGATAGAGGACCACTTGGTCAGCTCTTCAAAGAACTTGGCTTAACTGAAC
AGAAAGTAAGTCAAGCTATCGAGCAAATTCGCGGTGGTCAAAAAGTGAATGATCAAAATGCGGAAGAACTTCGCCAAGCG
TTAGAGAAATTTACCATTGATCTGACGGAACGTGCAGAGCAGGGCAAACTTGATCCTGTGATTGGACGTGACGATGAAAT
TCGTCGCACCATCCAAGTATTGCAGCGTCGAACCAAAAACAACCCCGTGATCATTGGTGAACCGGGTGTTGGTAAAACCG
CCATCGTTGAAGGCTTAGCGCAACGCATCATCAATAACGAGGTGCCTGAAGGTCTGCGTGGTCGCCGAGTGTTGTCACTC
GATATGGGCGCGTTGGTGGCTGGAGCGAAGTACCGTGGTGAATTTGAAGAGCGACTTAAATCGGTATTGAATGAGTTGTC
TAAAGAAGAAGGCAATATCATCCTCTTTATTGATGAGCTTCATACCATGGTTGGCGCCGGTAAAGGTGAAGGTTCGATGG
ATGCGGGCAATATGCTCAAACCCGCATTGGCACGTGGTGAGTTACATTGTGTGGGCGCAACGACACTCGATGAGTATCGT
CAGTATATCGAGAAAGATCCTGCACTTGAGCGCCGCTTCCAAAAAGTGCTGGTTGATGAACCAACAGTGGAAGACACCAT
TGCAATTTTGCGCGGTTTAAAAGAACGCTATGAGCTGCATCATCATGTTGAAATTACCGATCCAGCGATCGTTGCTGCGG
CCAGTTTGTCGCATCGCTATGTTTCTGATCGTCAATTACCAGATAAAGCGATCGACCTCATCGACGAAGCCGCATCCAGT
ATTCGCATGCAGATCGATTCTAAACCCGAAGCTCTGGATAAGTTGGAGCGCAAAATCATCCAACTTAAGATAGAGCAACA
GGCGCTGAGTAATGAACACGATGAAGCGAGTGAAAAACGTCTGCGCTCACTTAACGAAGAGTTGAATGAGAAAGAGCGTG
AGTTTGCTGAGTTAGAGGAAATTTGGAACGCGGAAAAAGCCGCGCTGTCTGGCACTCAGCATATTAAAGCGGCGTTAGAG
CAAGCGCGCATGGATATGGAGTTTGCAAGACGAGCGGGGGATCTTAGCCGCATGTCTGAGCTTCAATATGGCCGTATTCC
TGAGCTTGAGAAGCAACTTGACCTAGCAACGCAAGCGGAAATGCAGGAAATGACCTTGTTGAAAAACAAAGTCACCGATA
ATGAAATTGCGGAAGTGCTTTCTAAGCAAACGGGCATTCCTGTCTCCAAAATGCTTGAAGCAGAAAAAGAAAAGCTTCTT
CGCATGGAAGAGGTGCTGCATAAACGCGTTATTGGGCAGAAAGAGGCGGTGGAAGTTGTTTCAAATGCGATACGTCGCAG
CCGCGCGGGCTTGTCCGATCCCAATAAGCCTATTGGTTCGTTCTTATTCTTAGGTCCAACCGGTGTGGGAAAAACGGAAC
TGTGCAAAACGTTGGCGAATTTCATGTTCGACAGTGAAGATGCCATGGTGCGTATCGACATGTCCGAGTTTATGGAGAAA
CACTCAGTAGCACGCTTAGTCGGTGCGCCTCCTGGCTATGTGGGTTATGAAGAAGGTGGCTACTTAACGGAAGCCGTTCG
ACGTAAGCCTTATTCAGTAATTTTGCTCGACGAGGTGGAAAAGGCGCATCCTGATGTGTTCAACATCCTGCTGCAAGTCT
TGGATGATGGTCGATTGACGGATGGACAAGGTAGAACAGTGGATTTCCGCAATACCGTGGTCATCATGACATCAAACCTA
GGTTCCAGCCGCATCCAAGAAAACTTCGCTATGTTGGATTACCAAGGCATCAAAGAACAGGTGATGGAAGTGGTGACCAA
GCACTTTAGACCGGAGTTTTTGAACCGTGTTGATGAGACAGTCGTCTTCCACCCACTCGGTCAAGATCATATTAAGTCGA
TCGCAGCGATTCAACTTAAACGCTTGGCGAATCGCATGGAAGAGCATGGCTATCAGTTGGAAGTGTCTGATAAAGCGCTC
GAATTGATCGCACAAGTTGGTTTTGACCCGGTTTACGGAGCAAGACCATTGAAACGAGCGATTCAGCAAAGTATCGAGAA
CCCACTGGCGAAATCTATTTTGGCGGGCTCGGTGCTACCGGATAAGAAAATACAGCTTATCGTCAACAACGACCAAATTG
TGGCACACCAATAG

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-335)

• AAA lid domain (AAA_lid_9) (342-444)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-845)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.713	100	0.473
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.754	99.767	0.417
clpE	Streptococcus mutans UA159	48.012	79.23	0.38
clpE	Streptococcus pneumoniae D39	48.006	78.996	0.379
clpE	Streptococcus pneumoniae Rx1	48.006	78.996	0.379
clpE	Streptococcus pneumoniae R6	48.006	78.996	0.379
clpC	Lactococcus lactis subsp. cremoris KW2	46.154	80.397	0.371