Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   F6X00_RS01400 Genome accession   NZ_CP044206
Coordinates   321407..321874 (-) Length   155 a.a.
NCBI ID   WP_025787122.1    Uniprot ID   -
Organism   Vibrio vulnificus strain Vv180806     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 316407..326874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6X00_RS01360 (F6X00_01385) - 316763..317209 (-) 447 WP_047109993.1 hypothetical protein -
  F6X00_RS01365 (F6X00_01390) - 317320..318309 (-) 990 WP_047109995.1 GTPase family protein -
  F6X00_RS01370 (F6X00_01395) - 318387..318608 (+) 222 WP_047109997.1 AlpA family transcriptional regulator -
  F6X00_RS01375 (F6X00_01400) - 318605..319573 (-) 969 WP_047109999.1 YafY family protein -
  F6X00_RS01380 (F6X00_01405) - 319754..320005 (-) 252 WP_004724214.1 hypothetical protein -
  F6X00_RS01385 (F6X00_01410) - 320145..320483 (+) 339 WP_047110003.1 YkvA family protein -
  F6X00_RS01390 (F6X00_01415) - 320491..320922 (-) 432 WP_047110005.1 DUF2787 family protein -
  F6X00_RS01395 (F6X00_01420) - 320961..321410 (-) 450 WP_047110007.1 DUF2787 family protein -
  F6X00_RS01400 (F6X00_01425) radC 321407..321874 (-) 468 WP_025787122.1 DNA repair protein RadC Machinery gene
  F6X00_RS01405 (F6X00_01430) - 322017..322328 (-) 312 WP_140328790.1 hypothetical protein -
  F6X00_RS01410 (F6X00_01440) - 322995..324869 (-) 1875 WP_047110010.1 hypothetical protein -
  F6X00_RS01415 (F6X00_01445) - 325050..325277 (-) 228 Protein_273 IS3 family transposase -
  F6X00_RS01420 (F6X00_01455) - 325642..326742 (+) 1101 Protein_274 ISAs1 family transposase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17242.65 Da        Isoelectric Point: 6.2210

>NTDB_id=341475 F6X00_RS01400 WP_025787122.1 321407..321874(-) (radC) [Vibrio vulnificus strain Vv180806]
MRENNYYFDGPVTADRVLDAAAEILAARALRGDQYCNPEATKTYLSCKLKHHEREVFAVMFLDNQHRLIAFEELFFGTID
SASVYPREVLKAALKVNAAALIFAHNHPSGDATPSQADKQITQRLKEALALVDIRVLDHIVVGDSAISFAERGLL

Nucleotide


Download         Length: 468 bp        

>NTDB_id=341475 F6X00_RS01400 WP_025787122.1 321407..321874(-) (radC) [Vibrio vulnificus strain Vv180806]
ATGCGCGAAAATAACTACTATTTTGATGGTCCTGTTACGGCGGACAGGGTGCTCGACGCGGCCGCAGAAATCCTTGCTGC
ACGCGCCCTCCGAGGCGATCAATATTGCAATCCTGAAGCAACAAAAACCTATTTATCTTGCAAGTTAAAACACCATGAAA
GAGAGGTGTTTGCGGTGATGTTTCTAGATAATCAGCATCGCCTTATTGCCTTTGAAGAGCTGTTCTTTGGCACAATTGAT
TCGGCAAGTGTCTATCCCCGAGAAGTCCTCAAAGCGGCTTTAAAAGTCAATGCCGCCGCACTCATCTTTGCTCATAATCA
CCCTTCTGGCGATGCCACTCCTTCCCAAGCCGATAAACAAATTACGCAAAGGCTTAAAGAGGCTTTAGCGCTGGTGGACA
TTCGAGTTCTTGATCATATCGTGGTTGGCGATAGCGCCATCTCTTTTGCAGAAAGGGGGCTACTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(37-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.333

77.419

0.452

Multiple sequence alignment