Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   F4V23_RS01265 Genome accession   NZ_CP044175
Coordinates   256014..257354 (+) Length   446 a.a.
NCBI ID   WP_002777369.1    Uniprot ID   A0ABN0EPA8
Organism   Campylobacter coli strain AR-0411     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 251014..262354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V23_RS01235 - 251409..251966 (+) 558 WP_002777379.1 TlpA disulfide reductase family protein -
  F4V23_RS01240 pilA 251966..252832 (+) 867 WP_002781285.1 signal recognition particle-docking protein FtsY Machinery gene
  F4V23_RS01245 - 252829..253773 (-) 945 WP_002777375.1 GTP-binding protein -
  F4V23_RS01250 - 253766..254101 (-) 336 WP_002781288.1 hypothetical protein -
  F4V23_RS01255 - 254143..255024 (-) 882 WP_002781290.1 polysaccharide deacetylase -
  F4V23_RS01260 - 255027..255878 (-) 852 WP_002781292.1 carbon-nitrogen hydrolase family protein -
  F4V23_RS01265 radA/sms 256014..257354 (+) 1341 WP_002777369.1 DNA repair protein RadA Machinery gene
  F4V23_RS01270 - 257506..258186 (+) 681 WP_002777368.1 F0F1 ATP synthase subunit A -
  F4V23_RS01275 - 258183..258383 (+) 201 WP_002777366.1 hypothetical protein -
  F4V23_RS01280 metF 258393..259241 (-) 849 WP_002777362.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  F4V23_RS01285 metE 259251..261515 (-) 2265 WP_002845672.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  F4V23_RS01290 - 261538..262308 (-) 771 WP_002845675.1 MetQ/NlpA family ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49120.03 Da        Isoelectric Point: 6.9145

>NTDB_id=341434 F4V23_RS01265 WP_002777369.1 256014..257354(+) (radA/sms) [Campylobacter coli strain AR-0411]
MAKNKILFECQACGNQQSKWLGKCPECGSWDSFIELKSEQIKVLKEIAQASTKASEAICIEDVELEHFSRCSTDDDELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKKNKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKNYEILIIDSIQTLYSNKIASAAGSITQVREITFELMRVSKTYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTSEVGIFEMTPKGLISAKDLANRFFTRGKATSGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVRVNETAADLAVVAAIISSFKNRPLSKDCVFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIIPSKPLEDVGLKCFVAKELAQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=341434 F4V23_RS01265 WP_002777369.1 256014..257354(+) (radA/sms) [Campylobacter coli strain AR-0411]
ATGGCTAAAAATAAAATTCTTTTTGAATGCCAAGCTTGCGGAAATCAGCAAAGCAAATGGCTTGGAAAATGTCCTGAGTG
TGGTTCTTGGGATAGTTTTATAGAATTAAAATCTGAACAAATTAAAGTTTTAAAAGAAATCGCACAAGCAAGTACAAAAG
CAAGCGAGGCTATCTGTATAGAAGATGTGGAGCTCGAGCATTTTTCAAGGTGTAGCACTGATGATGATGAGCTGGATTTG
GTTTTAGGTGGAGGGCTTGTTGAGGGTTCTTTGGTGCTTATAGGTGGTAGCCCTGGGGTTGGCAAATCTACACTTTTACT
AAAGATTGCTTCTAATTTGGCTAAAAAAAATAAAAAAGTTCTTTATGTAAGCGGAGAAGAAAGTAAGGCGCAAATCAAAT
TAAGAGCCGATCGTCTTGAGGCTAATACTCCTAATTTATTTTTACTTACAGAGCTTTGTCTTGAAAATATTTTAGAAGAA
TTGCATAAGAAAAATTATGAAATTCTTATCATCGACTCCATACAAACCTTATATTCAAACAAAATTGCTTCAGCAGCTGG
AAGTATCACTCAAGTGCGCGAGATCACTTTTGAACTTATGCGAGTAAGCAAAACTTACAATATCAGCACTTTTATAATAG
GACATATCACCAAAGAAGGAGCCATAGCAGGCCCTAGGGTTTTAGAGCATATGGTCGATGTGGTGCTTTATTTTGAAGGG
GATGCAACTAAAGAAATCAGGCTTTTAAGGGGTTTTAAAAATCGCTTTGGTGGCACAAGCGAGGTGGGAATTTTTGAAAT
GACTCCTAAGGGTTTAATTAGTGCAAAAGATTTAGCCAATCGTTTTTTTACGCGAGGTAAAGCTACTTCAGGCAGTGCTT
TAGGTGTTGTAATGGAGGGTTCTCGTGCTTTGGTTTTAGAGGTGCAAGCTCTAGTGTGCGAGAGTTCTTATCCTAAACGC
AGTGCCACAGGCTATGAAAAAAATCGTCTTGATATGCTTTTGGCTTTACTTGAAAGAAAATTAGAAATTCCTCTTGGTCA
TTATGATGTTTTTGTAAATATTAGCGGTGGAGTAAGGGTAAATGAAACTGCGGCTGATTTGGCTGTGGTTGCGGCTATTA
TTTCTAGTTTTAAAAATCGCCCTTTGAGTAAGGATTGTGTTTTTATAGGGGAATTGAGTTTAAATGGAGAAATAAGAGAA
GTTTTTAGTCTTGATACCCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCTATTATTCCATCTAAACCTTTAGA
AGATGTAGGGCTTAAATGCTTTGTAGCCAAAGAGCTTGCCCAAGTTTTAGAATGGATGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(71-220)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

45.37

96.861

0.439
  radA Streptococcus pneumoniae Rx1

44.47

97.309

0.433
  radA Streptococcus pneumoniae D39

44.47

97.309

0.433
  radA Streptococcus pneumoniae R6

44.47

97.309

0.433
  radA Streptococcus pneumoniae TIGR4

44.47

97.309

0.433
  radA Streptococcus mitis SK321

44.444

96.861

0.43
  radA Streptococcus mitis NCTC 12261

44.444

96.861

0.43