Detailed information NTG0034141

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SGPB_RS10240
• Genome accession: NC_015600
• Coordinates: 2085263..2086357 (+)
• Length: 364 a.a.
• NCBI ID: WP_003067011.1
• Uniprot ID: E0PGK0
• Organism: Streptococcus pasteurianus ATCC 43144
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2080263..2091357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SGPB_RS11560	-	2081361..2081492 (-)	132	WP_230321704.1	Rha family transcriptional regulator	-
SGPB_RS11775	-	2081532..2081684 (-)	153	Protein_2026	helix-turn-helix domain-containing protein	-
SGPB_RS10215 (SGPB_2012)	-	2081703..2081888 (-)	186	WP_013852362.1	DNA-binding protein	-
SGPB_RS10220 (SGPB_2013)	-	2082092..2082724 (+)	633	WP_013852363.1	helix-turn-helix transcriptional regulator	-
SGPB_RS10225 (SGPB_2014)	-	2083154..2083366 (+)	213	WP_013852364.1	hypothetical protein	-
SGPB_RS10230 (SGPB_2015)	-	2083607..2084749 (+)	1143	WP_013852365.1	tyrosine-type recombinase/integrase	-
SGPB_RS10235 (SGPB_2016)	yaaA	2084883..2085260 (+)	378	WP_013852366.1	S4 domain-containing protein YaaA	-
SGPB_RS10240 (SGPB_2017)	recF	2085263..2086357 (+)	1095	WP_003067011.1	DNA replication/repair protein RecF	Machinery gene
SGPB_RS10245 (SGPB_2018)	-	2086419..2087285 (-)	867	WP_013852367.1	GRP family sugar transporter	-
SGPB_RS10250 (SGPB_2019)	guaB	2087525..2089006 (-)	1482	WP_003067014.1	IMP dehydrogenase	-
SGPB_RS10255 (SGPB_2020)	trpS	2089265..2090287 (-)	1023	WP_013852368.1	tryptophan--tRNA ligase	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 41782.80 Da
• Isoelectric Point: 6.8963

>NTDB_id=34141 SGPB_RS10240 WP_003067011.1 2085263..2086357(+) (recF) [Streptococcus pasteurianus ATCC 43144]
MWIQKITLKNYRNYLTSELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRTDKELIHFDAKELLVSGILQRSSGT
VPLDISLSSKGRVTKVNHLKQAKLSDYIGVMTVVLFAPEDLQLIKGAPSLRRKFIDIDLGQIKPIYLADLSNYNHVLKQR
NTYLKTAEKVDTDFLAVLDEQLADFGSRVMEHRLDFISNLEKEADRYHYAISNGIEHLSIHYLSSVSFQEKDDIKPNFLK
ALQKNQQRDIFKKNTSVGPHRDDLEFFINDMPANFGSQGQHRSLILSLKMAEIELIRTVTGDYPILLLDDVMSELDNYRQ
TELLKMIIDKNVQTFITTTSLDHLSQLPDDLKIFTVNQGNIQEN

Nucleotide

• Length: 1095 bp

>NTDB_id=34141 SGPB_RS10240 WP_003067011.1 2085263..2086357(+) (recF) [Streptococcus pasteurianus ATCC 43144]
ATGTGGATTCAAAAAATAACGTTAAAAAATTATCGTAACTATCTGACTAGTGAGCTTGAATTTTCTCCTGGACTTAATGT
TTTCATCGGAAAAAACGCTCAAGGAAAGACAAATTTCTTAGAAGCAATTTATTTCCTTTCTCTTACCCGCAGCCACCGCA
CACGAACAGACAAAGAGTTGATTCATTTTGATGCCAAAGAACTTCTGGTTTCTGGTATTTTACAACGTTCAAGTGGTACT
GTTCCTTTAGATATTAGTCTTTCAAGTAAGGGACGTGTTACAAAAGTTAATCATCTAAAACAAGCTAAGTTATCAGACTA
TATTGGTGTAATGACCGTTGTTCTTTTTGCACCTGAAGATTTACAACTCATCAAAGGCGCTCCAAGCCTTCGTCGAAAAT
TTATTGACATTGATTTAGGGCAAATAAAGCCGATTTATTTAGCTGATTTGTCTAATTATAACCACGTGCTAAAACAGCGT
AATACTTATCTTAAAACGGCTGAAAAAGTTGATACTGATTTTTTAGCTGTGCTTGATGAGCAATTAGCTGATTTTGGTAG
CCGTGTCATGGAACATCGTTTAGATTTCATTTCTAATTTAGAAAAAGAAGCCGACCGCTATCATTATGCCATTTCAAACG
GCATTGAACATCTTAGTATCCATTATCTGTCATCTGTTTCCTTCCAAGAAAAGGATGACATTAAGCCAAACTTCTTAAAA
GCTTTACAGAAAAATCAGCAGCGTGATATTTTCAAAAAAAATACAAGTGTTGGTCCTCACCGCGATGATTTGGAATTTTT
CATCAATGATATGCCAGCAAATTTTGGCAGCCAAGGTCAGCACCGTAGCTTAATCTTATCACTAAAAATGGCTGAAATTG
AGTTAATAAGAACAGTAACTGGTGATTATCCTATTTTGCTTTTAGATGATGTCATGAGCGAGCTTGATAATTACAGACAA
ACCGAACTCTTAAAAATGATTATTGATAAAAACGTTCAAACCTTCATTACAACAACGAGTCTCGACCACCTATCGCAGCT
TCCGGACGACTTAAAAATCTTTACAGTTAATCAAGGTAACATTCAAGAAAATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

3D structure

• AlphaFold DB: E0PGK0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.11	100	0.651
recF	Bacillus subtilis subsp. subtilis str. 168	46.705	95.879	0.448